- Probe CUST_26430_PI390587928
- Source Contig U35_14482
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26430_PI390587928 | Hv_44K_v2 | CTTTGAAGTTGGCAGTTCACTCCTTCCTTTTGGTGTGAATGAAACTGATGATTAACAGAA | 571 | GeneList: lightyellow MasterList: Sucrose_synthase_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.263 | 0.246 | 1.042 | 1.820 | 1.128 | 1.168 |
| Raw | 683.148 | 961.306 | 3804.147 | 10189.080 | 2238.583 | 2502.940 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_7835.2 | 3730 | 8e-25 | 3520 - 3579 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7835.1 | 3174 | 8e-25 | 2964 - 3023 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00554 | 788 | 3e-25 | 729 - 788 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00460 | 2849 | 3e-25 | 2753 - 2812 | 100 | 60 / 60 | plus | ABC00460 |
| Harvest21 | ABC00861 | 868 | 1e-23 | 55 - 114 | 98 | 59 / 60 | minus | ABC00861 |
| Harvest35 | U35_14484 | 1740 | 3e-25 | 1627 - 1686 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14482 | 631 | 3e-25 | 572 - 631 | 100 | 60 / 60 | plus |
Contig Sequence (631 bp)
>U35_14482 631 Hv_44K_v2 AACGCACATCTGAAGGACTTGGCAAACCTTGTGATTGTTGCTGGTGACCATGGCAAGGAG TCCAAGGATAGGGAGGAGCAGGCTGAGTTCAAGAGGATGTACAGCCTCATTGAGGAGTAC AAGCTGAAAGGCCATATCCGTTGGATCTCAGCTCAGATGAACCGTGTTCGCAATGGCGAG CTGTACCGCTACATATGCGACACCAAGGGAGCATTTGTGCAGCCTGCATTCTATGAAGCT TTTGGCCTGACTGTCATTGAGGCCATGACATGTGGTCTGCCGACAATTGCGACATGCCAC GGTGGCCCTGCTGAGATCATCGTGGATGGAGTGTCTGGTCTGCACATTGATCCTTACCAC AGCGACAAGGCCGTAGTTTCCATTTGGTCCGTCTGTCGTGGGGTGTGCGATTTGATGTCT CGGCACATTCGTGAGGTCTTGGGCAGTGCTGCTTGCTGGTTCATGCCAGCCGCCTCGAAT AAACGCCTGCCCGTGGTGTTCATCTTTCATCAGAGAGTTCAATGCAATGTTTCGTTGTGT GTCTCAAGTCTCAACTCACTCCCCTGTGTGCCTTTGAAGTTGGCAGTTCACTCCTTCCTT TTGGTGTGAATGAAACTGATGATTAACAGAA
Homology of Contig U35_14482 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g09450.8 | 804 | 1e-75 | protein|sucrose synthase, putative, expressed |
| Brachypodium v1_2 | Bradi1g46670.3 | 748 | 6e-81 | |
| Arabidopsis v10 | AT3G43190.1 | 808 | 9e-63 | | Symbols: SUS4, ATSUS4 | sucrose synthase 4 | chr3:15179204-15182577 REVERSE LENGTH=808 |