barSeed - Barley Seed Development Database

Probe CUST_26428_PI390587928

Source Contig U35_14484

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26428_PI390587928	Hv_44K_v2	TCCTTTTGGTGTGAATGAAACTGATGATTAACAGAAACTTTACACTTGCTAGAGGCAACT	1650	GeneList: lightyellow MasterList: Sucrose_synthase_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.349	0.342	1.369	2.079	1.184	1.175
Raw	81.720	118.858	445.418	1033.002	207.078	224.636

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_7835.2	3730	8e-25	3544 - 3603	100	60 / 60	plus
JLOC1	JLOC1_7835.1	3174	8e-25	2988 - 3047	100	60 / 60	plus
Harvest21	ABC00460	2849	4e-24	2777 - 2834	100	58 / 58	plus	ABC00460
Harvest21	ABC00861	868	1e-23	31 - 90	98	59 / 60	minus	ABC00861
Harvest35	U35_14484	1740	3e-25	1651 - 1710	100	60 / 60	plus

Contig Sequence (1740 bp)

>U35_14484 1740 Hv_44K_v2
GGTTCCATTTAGAACTGAGAACGGGATCCTCCGTAAGTGGATCTCGCGTTTCGATGTCTG
GCCATACCTTGAGACATATACCGAGGATGTTGCAAACGAACTCATGAGAGAAATGCAGAC
AAAGCCTGATTTGATCATTGGCAACTACAGTGACGGTAACCTTGTGGCCACTCTGCTTGC
CCATAAATTGGGTGTTACCCAGTGCACCATTGCCCATGCCTTGGAGAAAACCAAGTACCC
CAACTCAGACATATACTTGGACAAATTCGACAGCCAGTATCACTTTTCATGCCAGTTCAC
AGCTGACCTGATTGCCATGAACCACACTGATTTCATCATTACCAGCACATTCCAGGAAAT
TGCTGGAAGCAAGGATAGCGTGGGTCAATATGAGTCTCACATTGCTTTCACCCTCCCTGA
TCTGTACCGGGTTGTCCATGGGATTGACGTGTTTGATCCTAAGTTCAACATTGTCTCTCC
TGGAGCAGACATGACTGTCTACTTCCCATATACCGAGACTGACAAGAGGCTCACCGCCTT
CCACTCTGAAATTGAGGAGCTCCTGTACAGCGATGTTGAGAACGATGAACACAAATTTGT
GTTGAAGGACAGGAACAAGCCAATCATCTTTTCAATGGCTCGTCTTGACCGCGTGAAGAA
CATGACTGGCTTGGTTGAGATGTACGGAAAGAACGCACATCTGAAGGACTTGGCAAACCT
TGTGATTGTTGCTGGTGACCATGGCAAGGAGTCCAAGGATAGGGAGGAGCAGGCTGAGTT
CAAGAGGATGTACAGCCTCATTGAGGAGTACAAGCTGAAAGGCCATATCCGTTGGATCTC
AGCTCAGATGAACCGTGTTCGCAATGGCGAGCTGTACCGCTACATATGCGACACCAAGGG
AGCATTTGTGCAGCCTGCATTCTATGAAGCTTTTGGCCTGACTGTCATTGAGGCCATGAC
ATGTGGTCTGCCGACAATTGCGACATGCCACGGTGGCCCTGCTGAGATCATCGTGGATGG
AGTGTCTGGTCTGCACATTGATCCTTACCACAGCGACAAGGCCGCAGATATCTTGGTCAA
CTTCTTTGAGAAGAGCACGGCGGATCCAAGCTACTGGGACAAAATCTCCCAGGGAGGCCT
GAAGAGAATTTATGAGAAGTACACCTGGAAGCTCTACTCAGAGAGGCTGATGACCCTGAC
CGGTGTGTATGGGTTCTGGAAGTACGTGAGCAACCTGGAGAGGCGCGAGACTCGCCGTTA
CCTGGAGATGTTCTACGCTCTCAAGTACCGTAGCCTGGCTGCTGCAGTTCCATTGGCGGT
CGACGGCGAGAGCAGCGGCAACTAGCGCGGATTCGGGGCATGAAGAGGGCGCATTCATCG
AGCAGGAGGGTGAAGTGTCGGCTGCGCTATGATTTGTCTACCGTAGTTTCCATTTGGTCC
GTCTGTCGTGGGGTGTGCGATTTGATGTCTCGGCACATTCGTGAGGTCTTGGGCAGTGCT
GCTTGCTGGTTCATGCCAGCCGCCTCGAATAAACGCCTGCCCGTGGTGTTCATCTTTCAT
CAGAGAGTTCAATGCAATGTTTCGTTGTGTGTCTCAAAAAAAAAAAAAAAAAAATCCCCT
GTGTGCCTTTGAAGTTGGCAGTTCACTCCTTCCTTTTGGTGTGAATGAAACTGATGATTA
ACAGAAACTTTACACTTGCTAGAGGCAACTTGGNAAAAAAAAAANNNAAAAAAAAAAAAA

Homology of Contig U35_14484 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g09450.3	809	protein\|sucrose synthase, putative, expressed
Brachypodium v1_2	Bradi1g46670.1	809
Arabidopsis v10	AT5G20830.1	808	\| Symbols: SUS1, ASUS1, atsus1 \| sucrose synthase 1 \| chr5:7050599-7054032 REVERSE LENGTH=808