- Probe CUST_26427_PI390587928
- Source Contig U35_14485
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26427_PI390587928 | Hv_44K_v2 | GAGCAGCTTGTTGACGAGCATGCCAGCAGCAAATTTGTGCTCGAGCTTGATTTGAGCCTT | 452 | GeneList: plum1 MasterList: Sucrose_synthase_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.244 | 0.231 | 0.843 | 1.583 | 1.958 | 1.790 |
| Raw | 56.174 | 60.893 | 276.657 | 711.106 | 341.687 | 345.011 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK248622.1 | 3217 | 7e-23 | 933 - 993 | 98 | 60 / 61 | plus | ABC00361 ABC00460 ABC00689 ABC00861 ABC04054 ABC04056 ABC37458 |
| Harvest21 | ABC00928 | 705 | 1e-23 | 382 - 442 | 98 | 60 / 61 | plus | |
| Harvest35 | U35_14485 | 512 | 3e-25 | 453 - 512 | 100 | 60 / 60 | plus |
Contig Sequence (512 bp)
>U35_14485 512 Hv_44K_v2 ACACCCCATCACATTCATCACAGCCCCGTCATCTCCTCTGTCACACAAAGCCATTGTTCC GTTCTCCCGTCCGGCGTGTCCGCGCTAGTTTTGTGTCCTGAGCCATGGCTGCCAAGCTGA CCCGCCTCCACAGCCTCAGGGAGCGCCTTGGTGCCACCTTCTCCTCCCATCCCAATGAGC TCATTGCACTCTTCTCCAGGTATGTTCACCAGGGCAAAGGCATGCTTCAGCGCCACCAGC TGCTCGCTGAGTTTGACGCCCTGTTCGAATCCGACAAGGAGAAGTATGCACCCTTTGAAG ACATCCTCCGTGCTGCTCAGGAAGCAATTGTGCTTCCCCCATGGGTTGCACTTGCCATCA GGCCCAGGCCTGGTGTCTGGGACTACATTCGGGTGAATGTTAGCGAGTTGGCTGTGGAAG AGCTGACTGTTTCTGAGTACTTGGCATTCAAGGAGCAGCTTGTTGACGAGCATGCCAGCA GCAAATTTGTGCTCGAGCTTGATTTGAGCCTT
Homology of Contig U35_14485 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g09450.8 | 804 | 3e-76 | protein|sucrose synthase, putative, expressed |
| Brachypodium v1_2 | Bradi1g46670.3 | 748 | 9e-81 | |
| Arabidopsis v10 | None |