barSeed - Barley Seed Development Database

Probe CUST_26426_PI390587928

Source Contig U35_14486

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26426_PI390587928	Hv_44K_v2	GATCGGTCGTCATTCCGCACCAAGTTGCGAAATTTTGTGCTTCTTTTCTCAAGCAAAAAA	1284	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.451	5.984	1.239	0.753	0.327	0.477
Raw	1646.200	2549.173	431.278	441.780	62.172	101.028

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358741	274	2e-24	55 - 114	100	60 / 60	plus	ABC02762 ABC02766
MLOC	MLOC_73304.3	1983	2e-24	1756 - 1815	100	60 / 60	plus	ABC02762 ABC02764 ABC02766
MLOC	MLOC_73304.1	1819	2e-24	1557 - 1616	100	60 / 60	plus	ABC02762 ABC02764 ABC02766
MLOC	MLOC_73304.2	1695	2e-24	1445 - 1504	100	60 / 60	plus	ABC02762 ABC02764 ABC02766
JLOC1	JLOC1_48796.1	1654	8e-25	1370 - 1429	100	60 / 60	plus
Harvest21	ABC02766	566	3e-25	341 - 400	100	60 / 60	plus	ABC02766
Harvest21	ABC02763	868	3e-25	186 - 245	100	60 / 60	minus
Harvest21	ABC02762	1348	3e-25	1285 - 1344	100	60 / 60	plus	ABC02762
Harvest35	U35_36325	807	3e-25	610 - 669	100	60 / 60	plus
Harvest35	U35_14489	566	3e-25	341 - 400	100	60 / 60	plus
Harvest35	U35_14487	868	3e-25	624 - 683	100	60 / 60	plus
Harvest35	U35_14486	1348	3e-25	1285 - 1344	100	60 / 60	plus

Contig Sequence (1348 bp)

>U35_14486 1348 Hv_44K_v2
GCTGCCATCCGCGCTATCTGATACGCTCACTCACCGCTGCGTTGCTCGCCGGCTCAGATG
GCTCTTCAGGCGGCCACTTCCTTCCTCCCGTCGGCCCTCTCCGCGCGCAAGGAGGGAGCG
GCCAAGGACTCGGCCTTCTTCGGCGTACGTCTCGCCGATGGCCTCAAATTGGACGCCACC
TCCCTCGGCCTGCGCACCAAGAGAGTGAACACGTCGTCGGTGGCCATCCGCGCGCAGGCC
GCGGCGGTGTCCGCGCCGACAGCAACCCCGGCGTCGCCGGCCGGCAAGAAGACTGTCCGC
ACGGGCAACGCGATCATCACGGGCGCGTCGTCGGGCCTCGGCCTCGCCACGGCCAAGGCC
CTGGCGGAGTCAGGCAAGTGGCACGTCATCATGGCGTGCCGCGACTACCTCAAGACCGCG
CGCGCGGCCAGGGCGGCCGGCATGCCCAAGGGCAGCTACACCATCGTGCACCTTGATCTG
GCCTCCCTCGACAGCGTCCGCCAGTTCGTCAAGAACGTGCGCCAGCTCGACATGCCCATC
GACGTCGTCGTCTGCAACGCCGCCGTGTACCAGCCCACCGCCAAGGAGCCTTCCTTCACC
GCGGACGGCTTCGAGATGAGCGTCGGCGTCAACCACCTCGGCCACTTCCTCCTCGCCCGC
GAGCTCCTCGAGGACCTCAAGGCCTCCGACTACCCCTCCAAGCGCCTCATCATCGTCGGC
TCCATTACCGGGAACACGAACACGCTTGCCGGGAACGTGCCGCCGAAGGCCAACCTGGGG
GACCTGAGGGGCCTCGCGGCCGGGCTGAACGGCGTGGGCAGCGCCGCCATGATCGACGGC
GCGGAGTTCGACGGCGCCAAGGCTTACAAGGACAGCAAGGTGTGCAACATGCTGACCATG
CAGGAGTTCCACCGGCGGTACCACGAGGAGACCGGCGTCACCTTCGCGTCGCTCTACCCG
GGGTGCATCGCCACCACGGGGCTCTTCCGTGAACACATCCCTCTGTTCCGCCTCCTCTTC
CCGCCGTTCCAGAAGTACATCACCAAGGGGTACGTGTCCGAGGAGGAGGCCGGCAAGAGG
CTGGCGCAGGTCGTCAGCGAGCCCAGCCTCACCAAGTCCGGCGTCTACTGGAGCTGGAAC
AAAAACTCGGCGTCCTTCGAGAACCAGCTCTCCGAGGAGGCCAGCGACACCGAGAAGGCC
AGGAAGGTCTGGGAGCTCAGCGAGAAGCTCGTCGGGCTCGCATGATCACCGACTGGCCGG
CTCTCCGGCGAGGTCTCAAACCCCGATCGGTCGTCATTCCGCACCAAGTTGCGAAATTTT
GTGCTTCTTTTCTCAAGCAAAAAAAAAA

Homology of Contig U35_14486 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g35370.1	403	protein\|oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed
Brachypodium v1_2	Bradi3g57380.1	395
Arabidopsis v10	AT5G54190.1	405	\| Symbols: PORA \| protochlorophyllide oxidoreductase A \| chr5:21991183-21992773 REVERSE LENGTH=405