barSeed - Barley Seed Development Database

Probe CUST_26425_PI390587928

Source Contig U35_14487

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26425_PI390587928	Hv_44K_v2	TAGTTCTTTTCGCTTCGATTTGGTAATAGTGACAATAAAGTGTCTTGGGCAGCCAAAAAA	797	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.709	4.992	1.322	0.769	0.350	0.526
Raw	711.614	1257.538	268.560	256.162	39.517	65.203

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73304.1	1819	7e-23	1731 - 1787	100	57 / 57	plus	ABC02762 ABC02764 ABC02766
MLOC	MLOC_73304.2	1695	7e-23	1619 - 1675	100	57 / 57	plus	ABC02762 ABC02764 ABC02766
MLOC	MLOC_73304.3	1983	3e-21	1930 - 1983	100	54 / 54	plus	ABC02762 ABC02764 ABC02766
JLOC1	JLOC1_48796.1	1654	4e-23	1544 - 1600	100	57 / 57	plus
Harvest21	ABC02763	868	3e-25	12 - 71	100	60 / 60	minus
Harvest21	ABC02766	566	8e-21	515 - 566	100	52 / 52	plus	ABC02766
Harvest35	U35_14487	868	3e-25	798 - 857	100	60 / 60	plus
Harvest35	U35_14489	566	8e-21	515 - 566	100	52 / 52	plus

Contig Sequence (868 bp)

>U35_14487 868 Hv_44K_v2
AGCTCGACATGCCCATCGACGTCGTCGTCTGCAACGCCGCCGTGTACCAGCCCACCGCCA
AGGAGCCTTCCTTCACCGCGGACGGCTTCGAGATGAGCGTCGGCGTCAACCACCTGGGGG
ACCTGAGGGGCCTCGCGGCCGGGCTGAACGGCGTGGGCAGCGCCGCCATGATCGACGGCG
CGGAGTTCGACGGCGCCAAGGCTTACAAGGACAGCAAGGTGTGCAACATGCTGACCATGC
AGGAGTTCCACCGGCGGTACCACGAGGAGACCGGCGTCACCTTCGCGTCGCTCTACCCGG
GGTGCATCGCCACCACGGGGCTCTTCCGTGAACACATCCCTCTGTTCCGCCTCCTCTTCC
CGCCGTTCCAGAAGTACATCACCAAGGGGTACGTGTCCGAGGAGGAGGCCGGCAAGAGGC
TGGCGCAGGTCGTCAGCGAGCCCAGCCTCACCAAGTCCGGCGTCTACTGGAGCTGGAACA
AAAACTCGGCGTCCTTCGAGAACCAGCTCTCCGAGGAGGCCAGCGACACCGAGAAGGCCA
GGAAGGTCTGGGAGCTCAGCGAGAAGCTCGTCGGGCTCGCATGATCACCGACTGGCCGGC
TCTCCGGCGAGGTCTCAAACCCCGATCGGTCGTCATTCCGCACCAAGTTGCGAAATTTTG
TGCTTCTTTTCTCAAGCAAAAAAAAAGGAAAAATAATTGTAGGACACGTTTCGCACAAAC
TGCTAGGTTAAGTATGTGGCGCCCCCGGTTAAGTCCGAAGTGGTTACAGTTCACAAGTGA
GTTTAAGCCTGTAAAACTAGTTCTTTTCGCTTCGATTTGGTAATAGTGACAATAAAGTGT
CTTGGGCAGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14487 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35370.2	289	1e-119	protein\|oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed
Brachypodium v1_2	Bradi3g57380.1	395	3e-120
Arabidopsis v10	AT5G54190.1	405	3e-110	\| Symbols: PORA \| protochlorophyllide oxidoreductase A \| chr5:21991183-21992773 REVERSE LENGTH=405