barSeed - Barley Seed Development Database

Probe CUST_26423_PI390587928

Source Contig U35_14488

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26423_PI390587928	Hv_44K_v2	GAAGATGTACAATTTTCGGCAAACATTGGAATAATAAAACCGCAGGCCTGATTGAGGATG	1461	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.846	8.832	1.294	0.528	0.758	0.654
Raw	445.834	581.109	79.141	54.216	23.673	24.494

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355418	841	2e-24	780 - 839	100	60 / 60	plus	ABC02762 ABC02764 ABC02766
MLOC	MLOC_1579.1	1141	2e-24	1081 - 1140	100	60 / 60	plus	ABC02762 ABC02764
MLOC	MLOC_1579.2	1612	2e-24	1552 - 1611	100	60 / 60	plus	ABC02762 ABC02764 ABC02766
JLOC1	JLOC1_965.2	1141	8e-25	972 - 1031	100	60 / 60	plus
JLOC1	JLOC1_965.1	1632	8e-25	1463 - 1522	100	60 / 60	plus
Harvest21	ABC02765	509	3e-25	20 - 79	100	60 / 60	minus
Harvest21	ABC02764	1505	3e-25	1429 - 1488	100	60 / 60	plus	ABC02764
Harvest35	U35_48157	453	3e-25	123 - 182	100	60 / 60	minus
Harvest35	U35_14488	1553	3e-25	1462 - 1521	100	60 / 60	plus

Contig Sequence (1553 bp)

>U35_14488 1553 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGACCAACCCACTGGTGAAGTACAGCAGCACAGTGCACTCG
AGTTCGAGCTCGTTGAACTCCTGCAGTGCAGTGCTAGCTAGCGACAGTCCAAGCTCACCG
TCATCCATGGCTCTCCAGCTTCTCCCCTCCACCCTCTCCGTCCCCAAGAAGGGCAGCAGC
ATGGGCGCAGTGGCGGTGAAGGACACGGCGGCGTTCCTGGGCGTGAGCAGCAAGGCGAAG
AAGGCGTCGCTGGCGGTGAGGACGCAGGTGGCCACGGCGCCTTCGCCGGTGACGACGAGC
CCGGGCTCGACCGCGTCGTCGCCGAGCGGCAAGAAGACGCTGCGGCAGGGCGTGGTGGTG
ATCACGGGCGCGTCATCCGGGCTGGGCCTGGCGGCGGCCAAGGCGCTGGCCGAGACGGGC
AAGTGGCACGTCGTCATGGCGTGCCGCGACTTCCTCAAGGCCTCCAAGGCGGCCAAGGCG
GCGGGCATGGCGGACGGCAGCTACACCGTCATGCACCTCGACCTCGCCTCCCTCGACAGC
GTCCGGCAGTTCGTTGACGCGTTCCGCCGCGCCGAGATGCCGCTGGATGTGCTGGTGTGC
AACGCCGCCATCTACCGGCCCACGGCGCGCACGCCGACCTTCACCGCCGACGGGCACGAG
ATGAGCGTGGGCGTGAACCACCTGGGCCACTTCCTGCTCGCCCGCCTCCTCATGGAGGAC
CTCCAGAAGTCCGACTACCCGTCCCGCCGCATGGTCATCGTCGGCTCCATTACCGGCAAC
AGCAACACGCTGGCGGGCAACGTGCCGCCCAAGGCCAGCCTCGGCGACCTCCGCGGGCTG
GCCGGAGGCCTCAGCGGCGCGTCCGGCTCCGCCATGATCGACGGCGACGAGAGCTTCGAC
GGCGCCAAGGCGTACAAGGACAGCAAGGTGTGCAACATGCTGACCATGCAGGAGTTCCAC
CGGCGGTACCACGAGGAGACCGGCATCACCTTCTCCTCGCTCTACCCGGGCTGCATCGCC
ACCACGGGGCTGTTCCGGGAGCACATCCCGCTGTTCCGGACCCTCTTCCCGCCGTTCCAG
AAGTTCGTCACCAAGGGGTTCGTGTCGGAGGCGGAGTCCGGCAAGAGGCTGGCGCAGGTG
GTGGCGGAGCCCAGCCTGACAAAGTCCGGCGTGTACTGGAGCTGGAACAAGGACTCGGCG
TCCTTCGAGAACCAGCTCTCCCAGGAGGCCAGCGACCCCGAGAAGGCCCGCAAGGTCTGG
GAGCTCAGCGAGAAGCTCGTCGGACTCGCATGATCCACCGCAAATCCCATGGATGCATGC
ATGCATCTAGGACGCCGGCCGATGCTCAACTTGTCGTTTTTTTAAACTTATTTGGTAATT
ATCATGTTTACGCCTTTTTAGAAGCTCAATTACGCAGGAGAGGCCTTGCGAGTGGCCGCG
AGAGTGCATAGATCTCGTGTGGAAGATGTACAATTTTCGGCAAACATTGGAATAATAAAA
CCGCAGGCCTGATTGAGGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14488 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g58200.1	388	0.0	protein\|protochlorophyllide reductase A, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi5g26230.1	389	0.0
Arabidopsis v10	AT5G54190.1	405	1e-162	\| Symbols: PORA \| protochlorophyllide oxidoreductase A \| chr5:21991183-21992773 REVERSE LENGTH=405