- Probe CUST_26421_PI390587928
- Source Contig U35_14489
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26421_PI390587928 | Hv_44K_v2 | TGTAAAACTAGTTCTTTTCGCTTCGATTTGGTAATAGTGACAATAAAGTGTCTTGGGCAG | 506 | GeneList: royalblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.877 | 5.197 | 1.306 | 0.760 | 0.362 | 0.522 |
| Raw | 543.615 | 968.177 | 196.643 | 195.943 | 30.021 | 48.378 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_73304.3 | 1983 | 2e-24 | 1922 - 1981 | 100 | 60 / 60 | plus | ABC02762 ABC02764 ABC02766 |
| MLOC | MLOC_73304.1 | 1819 | 2e-24 | 1723 - 1782 | 100 | 60 / 60 | plus | ABC02762 ABC02764 ABC02766 |
| MLOC | MLOC_73304.2 | 1695 | 2e-24 | 1611 - 1670 | 100 | 60 / 60 | plus | ABC02762 ABC02764 ABC02766 |
| JLOC1 | JLOC1_48796.1 | 1654 | 8e-25 | 1536 - 1595 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02766 | 566 | 3e-25 | 507 - 566 | 100 | 60 / 60 | plus | ABC02766 |
| Harvest21 | ABC02763 | 868 | 3e-25 | 20 - 79 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_14489 | 566 | 3e-25 | 507 - 566 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14487 | 868 | 3e-25 | 790 - 849 | 100 | 60 / 60 | plus |
Contig Sequence (566 bp)
>U35_14489 566 Hv_44K_v2 GCACGAGGAACATGCTGACCATGCAGGAGTTCCACCGGCGGTACCACGAGGAGACCGGCG TCACCTTCGCGTCGCTCTACCCGGGGTGCATCGCCACCACGGGGCTCTTCCGTGAACACA TCCCTCTGTTCCGCCTCCTCTTCCCGCCGTTCCAGAAGTACATCACCAAGGGGTACGTGT CCGAGGAGGAGGCCGGCAAGAGGCTGGCGCAGGTCGTCAGCGAGCCCAGCCTCACCAAGT CCGGCGTCTACTGGAGCTGGAACAAAAACTCGGCGTCCTTCGAGAACCAGCTCTCCGAGG AGGCCAGCGACACCGGCTCTCCGGCGAGGTCTCAAACCCCGATCGGTCGTCATTCCGCAC CAAGTTGCGAAATTTTGTGCTTCTTTTCTCAAGCAAAAAAAAAGGAAAAATAATTGTAGG ACACGTTTCGCACAAACTGCTAGGTTAAGTATGTGGCGCCCCCGGTTAAGTCCGAAGTGG TTACAGTTCACAAGTGAGTTTAAGCCTGTAAAACTAGTTCTTTTCGCTTCGATTTGGTAA TAGTGACAATAAAGTGTCTTGGGCAG
Homology of Contig U35_14489 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g35370.2 | 289 | 2e-64 | protein|oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed |
| Brachypodium v1_2 | Bradi3g57380.1 | 395 | 1e-64 | |
| Arabidopsis v10 | AT1G03630.1 | 401 | 9e-62 | | Symbols: POR C, PORC | protochlorophyllide oxidoreductase C | chr1:907699-909245 FORWARD LENGTH=401 |