barSeed - Barley Seed Development Database

Probe CUST_26417_PI390587928

Source Contig U35_26461

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26417_PI390587928	Hv_44K_v2	TTAGGTGAGACTGCTAGTGATGATGATATTGTTTGGATTGGCAGTTCATCGACTACGCTG	625	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365524	4501	2e-24	1453 - 1512	100	60 / 60	plus	ABC15872
MLOC	MLOC_74275.1	3152	2e-24	805 - 864	100	60 / 60	plus	None
MLOC	MLOC_74275.2	4500	2e-24	904 - 963	100	60 / 60	plus	ABC15872
JLOC1	JLOC1_49496.1	6299	8e-25	5444 - 5503	100	60 / 60	minus
JLOC1	JLOC1_49495.2	6115	8e-25	902 - 961	100	60 / 60	plus
JLOC1	JLOC1_49495.1	4537	8e-25	904 - 963	100	60 / 60	plus
Harvest21	ABC23627	731	3e-25	626 - 685	100	60 / 60	plus
Harvest35	U35_26461	731	3e-25	626 - 685	100	60 / 60	plus

Contig Sequence (731 bp)

>U35_26461 731 Hv_44K_v2
GAGTGGATGTGAGAACTCAGCTGCTGACAACTTGGGGAAGGAGAAAGGGAAGATCAGGGA
TGATGCTGTTGCAGAAGCAGGGAAAGCAACAAACACACAGCATGAGAAATCAGCATTGGA
TGTCACAGGGAAAGTAACAAACGCACAGCATGAGAAATCAGCATCGGATGTCACAGGGAA
AGCAGCAAATACTCAGCATGAGAAATCAGCAGCATCGGATGTCACAGAGAAAGTAACGAA
TACACAGCATGAGAAATCAGCAGCATCGGATGTCACAGAGAAAGTAACAAATACACAGCA
TGAGAAATCAGCACCGGATGTCACAGAGAAAGTAACAAATAGACAGCATGAGAAATCAGC
ATCGGATGTCACAGAGAAAGTGTGTGGAGGAGATGAAGCTGCCAGTGCCATTGATCAAGG
TGGACAGAGCACTTCCTCCGTTACACGACAAGATTGTGTCAATGCTGCTGATGTGGGTGG
GCAGAGCACTTCGTCTGGTATCCTGAAGGAGGTTAGCATGGAAGAAGTGACACCACAAGT
TGAAACTGCCATTGCTGTCGATGATGTTGGGAAGGGCACTTCATCGAGCATACAGAAAGA
ATCACTGCAGGAGGCTGTAATGGCATTAGGTGAGACTGCTAGTGATGATGATATTGTTTG
GATTGGCAGTTCATCGACTACGCTGCACANAGTTCTTNCTAAAGAAGCAACAGATGGAAA
CATCAATGCAG

Homology of Contig U35_26461 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None