barSeed - Barley Seed Development Database

Probe CUST_26406_PI390587928

Source Contig U35_38440

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26406_PI390587928	Hv_44K_v2	GTGAGGAGGAAGCCTGGCTGGAAAATTACAACAAAGATGACAATCGTTACAATGCTGGGA	276	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.259	1.195	1.518	1.023	0.517	0.497
Raw	117.309	153.014	188.274	193.936	33.918	37.535

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12156.2	2769	7e-23	1410 - 1469	98	59 / 60	plus	ABC18011
MLOC	MLOC_12156.3	2639	7e-23	1410 - 1469	98	59 / 60	plus	ABC18011
MLOC	MLOC_12156.1	2710	7e-23	1507 - 1566	98	59 / 60	plus	ABC18011
JLOC1	JLOC1_8141.1	2686	4e-23	1410 - 1469	98	59 / 60	plus
Harvest21	ABC34405	508	3e-25	277 - 336	100	60 / 60	plus
Harvest35	U35_38440	508	3e-25	277 - 336	100	60 / 60	plus

Contig Sequence (508 bp)

>U35_38440 508 Hv_44K_v2
GGGAAGCTGAGGTTTTAAGACTTGAGCAACTGAAAGGAAGCAAAATGAAGGACCTTGTTT
TGAAAAAGAAATCAGAACTGGAGGAGCACCGAAGACGCGCACATCTAATTGGCGAGGATG
GATATTCAGATGAATTTAACATTGAGGCTATTGAGTCCGGAGCTATTGATCCTGCATTAT
TTCTGGAACAACTTGAGGCTCACATTGCAACAGTGAAAGATGAAGCTTTCAGTCGGAAGG
ATATTCTTGAGAAGGTTGAAAGGTTTCTGAATGCATGTGAGGAGGAAGCCTGGCTGGAAA
ATTACAACAAAGATGACAATCGTTACAATGCTGGGAAGGGGGCACATNTGACGCTTAAGA
GGGCCGGNAAAGCACGCATTTTGGTTAACAAGATTNCGGNAATGGTAAATGTTTTGACCA
CAAAAANTATTGNTTGGGAAAATGAAAGAGGGAAAGAATTCACATATGATGGTGTACCCC
TTTTTTNAACGCTGNACAAATACATGAT

Homology of Contig U35_38440 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g49200.1	690	1e-84	protein\|microtubule associated protein, putative, expressed
Brachypodium v1_2	Bradi2g46800.1	689	1e-94
Arabidopsis v10	AT3G60840.1	648	2e-60	\| Symbols: MAP65-4 \| microtubule-associated protein 65-4 \| chr3:22477573-22480463 REVERSE LENGTH=648