barSeed - Barley Seed Development Database

Probe CUST_26405_PI390587928

Source Contig U35_38442

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26405_PI390587928	Hv_44K_v2	TTAGAGCTGCAGTCCCCTGTAAAAAATGATGATACAACATCTCGGCAAGCAGGCATAGCT	652	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16827.2	1228	2e-24	1037 - 1096	100	60 / 60	plus	ABC04602
JLOC1	JLOC1_11614.1	1153	8e-25	954 - 1013	100	60 / 60	plus
Harvest21	ABC34410	712	3e-25	653 - 712	100	60 / 60	plus
Harvest35	U35_38442	712	3e-25	653 - 712	100	60 / 60	plus

Contig Sequence (712 bp)

>U35_38442 712 Hv_44K_v2
GGCACAGTGCTGGTCTCTATAATCTGGGGAATACATGTTACATGAATTCCACCCTGCAGT
GTCTGCATTCTGTTCCAGAGCTCAAGTCAGCACTACTGAGTTATTCAGATAATGCGAGGG
GCAATGGGGTGGATCAAGCATCCCATACTTTGACAGTTGCAACTCGTAATACTTTTGGAG
AGCTTGATCAAAGCATCCGACCAGTTGCACCTCTGCACTTCTTACAGATGCTGCGGAAGA
AATACCCCCAATTTGCTCAACAGCAAAATAATGTTTACATGCAGCAGGACGCAGAGGAGT
GCTGGACACAGCTGGTCTATACGCTTTCTCAAACCCTTACATCAGAAGCAAGTGAACCTA
CTGCTGGTCAGATGAAGGAACTTTTCGGGATTGATCTTGTGAGCAGGTTCTATCGTCCTC
CCTCTTATATCTGTTTTTATGGCTCTATATGTTTGTTTTGTTTTCTTGAACCTGTATGTT
CGTTTTCTTGTAGGGATTTGTCATCAACTTGATACTGACACTGCTGTATTTTCACTTGCA
TTGTACAGTGCATAGTGATAGTCAGTTGGCTATTGCTGATAACACTAGTTTTATGCATCT
ATTAGAAAAACTAGGTCTCCTGCATTTCTAGGACACCAAAGGATATAGAGCATTAGAGCT
GCAGTCCCCTGTAAAAAATGATGATACAACATCTCGGCAAGCAGGCATAGCT

Homology of Contig U35_38442 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g36930.1	475	1e-83	protein\|ubiquitin carboxyl-terminal hydrolase 6, putative, expressed
Brachypodium v1_2	Bradi2g40820.2	430	6e-86
Arabidopsis v10	AT1G51710.1	482	9e-54	\| Symbols: UBP6, ATUBP6 \| ubiquitin-specific protease 6 \| chr1:19175805-19179894 REVERSE LENGTH=482