- Probe CUST_263_PI390587928
- Source Contig U35_32044
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_263_PI390587928 | Hv_44K_v2 | TTGATTGACTGCGTTCCCTCTCATCTCCAACCCGCATTTGACCACCCGATGCTCAAGGGG | 229 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.721 | 1.808 | 4.674 | 1.893 | 0.970 | 0.802 |
| Raw | 4.049 | 22.167 | 48.130 | 30.174 | 4.091 | 2.897 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_64981.8 | 815 | 2e-24 | 220 - 279 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_64981.2 | 1677 | 2e-24 | 345 - 404 | 100 | 60 / 60 | plus | ABC43163 |
| MLOC | MLOC_64981.6 | 1855 | 2e-24 | 1244 - 1303 | 100 | 60 / 60 | minus | ABC43163 |
| JLOC1 | JLOC1_42716.2 | 1675 | 8e-25 | 399 - 458 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42716.1 | 1780 | 8e-25 | 399 - 458 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_32044 | 435 | 3e-25 | 230 - 289 | 100 | 60 / 60 | plus |
Contig Sequence (435 bp)
>U35_32044 435 Hv_44K_v2 AAGCATGGCTTGGAGCTTCCACTTTGCTCCCTTGCTCCTCCTCCTCCTCCTGCTCTCCTC CACTTCTGCGTCGGCCTCCTCCGGGCAGCACAGCACCGGCAACGCCACCGCCACCGCCAC CGCAAGCCAGATGCCAGGGCGGGAGCTGCTCAAGCAACGGAGGATCAGGGCTCTACTCGA CAGGCTCAACAAGCCGCCCCTCAAGACCATCAAGAGCCCGGATGGTGATTTGATTGACTG CGTTCCCTCTCATCTCCAACCCGCATTTGACCACCCGATGCTCAAGGGGCAGAAGCCTCT GGACCCGCCGGAGAGGCCCAGGAACTACAACTCCACCATTGCCGGAGCGTTGGTGGTGCA GGCGTGGCATGCCGCCGGCGAGGCGTGCCCGGAAGGGACGGTGCCGCTGCGGCGGACGAC GGAGCAGGATCTGCT
Homology of Contig U35_32044 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |