barSeed - Barley Seed Development Database

Probe CUST_26396_PI390587928

Source Contig U35_14494

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26396_PI390587928	Hv_44K_v2	TTCTATGACGACAACCACATCTCCATTGACGGAGACACAGAGATTGCGTTTACAGAGGAT	808	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.474	0.954	1.724	1.593	0.503	0.529
Raw	24.761	22.420	41.138	57.522	5.667	7.027

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20190.2	4039	2e-24	1025 - 1084	100	60 / 60	plus	ABC01618 ABC40569 ABC47439
MLOC	MLOC_20190.1	2056	2e-24	457 - 516	100	60 / 60	plus	ABC01618 ABC40569
MLOC	MLOC_20190.3	2416	2e-24	452 - 511	100	60 / 60	plus	ABC01618 ABC40569 ABC47439
JLOC1	JLOC1_14002.1	2460	8e-25	458 - 517	100	60 / 60	plus
Harvest21	ABC01620	1738	3e-25	323 - 382	100	60 / 60	plus
Harvest21	ABC01619	2184	3e-25	809 - 868	100	60 / 60	plus
Harvest35	U35_14494	1628	3e-25	809 - 868	100	60 / 60	plus

Contig Sequence (1628 bp)

>U35_14494 1628 Hv_44K_v2
TCCGCCACACACCATGGCAGCGCACTCCGTCGCCGCCGCGCACGCCACCATCGCGGCCCG
CGCGGGCGCCGCGCCGTCCTCCCCGGCGGCCGCCCCGGCCGAGCGCCTGGGCTTCCGCCT
CAGCTCGCTGGCCGGCCGCGCCGGGGGGGGGGCGCTCCCGGCCCGCCGCGGCTCCCCCGC
CGCCGCCGCCTCCTCCCGCCGGAGCGGCGGCCTGCACCGCGTGCGCGCCTCCGCGGCCGT
CGAGACCGTCGAGGCGGCCGCCACGGGCGAGCTGCTCGACAAGTCGGTCAACGCGATCCG
GTTCCTGGCCATCGACGCCGTCGAGAAGGCCGTGTCCGGCCACCCGGGGCTCCCCATGGG
CTGCGCCCCCATGGGCCACATCCTCTACGACGAGGTCATGCGCTACAACCCCAAGAACCC
CTACTGGTTCAACCGCGACCGCTTCGTCCTCTCCGCCGGCCACGGCTGCATGCTCCAGTA
CGCCCTCCTCCACCTCGCCGGCTACGACGCCGTCAAGGAAGAGGACCTGAAGCAGTTCAG
ACAGTGGGGAAGCTCCACCCCGGGACACCCCGAGAACTTCGAGACTCCTGGAGTTGAAGT
CACCACTGGTCCTCTTGGTCAGGGTATCGCGAATGCCGTCGGGTTGGCGCTTGCTGAGAA
GCACCTGGCTGCTCGTTTCAACAAGCCCGACAGTGAAATCGTTGACCACTACACGTACTG
TATTGTCGGAGATGGGTGCAACATGGAGGGTATCTTGACTGAAGCTTGCTCATTGGCTGG
GCATTGGGGTCTTGGCAAGCTTATTGTCTTCTATGACGACAACCACATCTCCATTGACGG
AGACACAGAGATTGCGTTTACAGAGGATGTGAGTGGCCGCTTTGAGGCTCTTGGGTGGCA
CACACTCTGGGTTAAGAATGGCAACGATGGTTATGACGAGATCCGTAAAGCCATCCAGGA
AGCAAAGTCAGTTACCGACAAGCCTACAATGATCAAGGTGACCACCACAATCGGTTTTGG
ATCTCCCAACAAGGCCAACTCATACGCTGTGCACGGAGCTGCATTGGGCACCAGCGAGGT
CGAAGCGACCAGGGCAAACCTCGGATGGCCATATGAGCCATTCTTTGTGCCTGAGGATGT
CAAGAGCCACTGGAGCCGCCATATTCCCCAGGGTGCCGCGCTTGAGGCTGACTGGGATGC
TAAGTTTGCACAGTATGAGCAGAAGTACCCAGAAGATGCCGCCACCTTGAAAAGTATTAT
CACAGGAGAGTTGCCCGCTGGCTGGGCCGATGCTCTTCCTCAATACACTACAGAGAGCCC
AGCAGATGCCACCAGGAATCTCTCCCAGCAATGCTTGAATGCACTTGCTAAAGTCGTGCC
TGGTCTTATTGGAGGCAGTGCTGATCTTGCGTCCTCCAACATGACATTGCTTAAGATGTT
TGGCGACTTCCAGAAGGATACCCCTGAGGAGCGCAATGTCCGCTTTGGAGTCAGGGAGCA
CGGCATGGGCGCCATCTGCAACGGCATTGCGCTGCACACACCAGGGCTCATTCCATACTG
TGCAACTTTCTTTGTTTTCACTGACTACATGAGAGGTGCCATGAGGATCTCAGCCTTGTC
TGAAGCTG

Homology of Contig U35_14494 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g04270.1	744	protein\|transketolase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g51670.1	742
Arabidopsis v10	AT3G60750.1	741	Transketolase \| chr3:22454004-22456824 FORWARD LENGTH=741