barSeed - Barley Seed Development Database

Probe CUST_26394_PI390587928

Source Contig U35_14496

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26394_PI390587928	Hv_44K_v2	GACGGCTATGATGCCTAGTATCATCAGTCAGTTCAATAAAAATAGAGTGTTTGCCATCAA	1750	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.514	1.366	1.037	1.012	0.450	0.549
Raw	3993.933	5654.910	3803.967	6016.137	901.517	1213.312

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20190.2	4039	6e-24	3131 - 3189	100	59 / 59	plus	ABC01618 ABC40569 ABC47439
MLOC	MLOC_20190.3	2416	6e-24	2287 - 2345	100	59 / 59	plus	ABC01618 ABC40569 ABC47439
JLOC1	JLOC1_14002.1	2460	3e-24	2293 - 2351	100	59 / 59	plus
Harvest21	ABC01618	1383	3e-25	16 - 75	100	60 / 60	minus	ABC01618
Harvest21	ABC51249	309	1e-24	194 - 252	100	59 / 59	plus
Harvest35	U35_14496	1872	3e-25	1751 - 1810	100	60 / 60	plus

Contig Sequence (1872 bp)

>U35_14496 1872 Hv_44K_v2
GGTGGCACACACTCTGGGTTAAGAACGGCAACGATGGTTACGACGAGATCCGTAAAGCCA
TCCAGGAAGCAAAGTCAGTTACCGACAAGCCTACAATGATCAAGGTGACCACCACAATCG
GTTTTGGATCTCCCAACAAGGCCAACTCATACGCTGTGCACGGAGCTGCATTGGGCACCA
GCGAGGTCGAAGCGACCAGGGCAAACCTCGGATGGCCATATGAGCCATTCTTTGTGCCTG
AGGATGTCAAGAGCCACTGGAGCCGCCATATCCCCCAAGGTGCCGCGCTTGAGGCTGACT
GGGATGCTAAGTTTGCACAGTATGAGCAGAAGTACCCAGAAGATGCCGCGACCTTGAAAA
GTATTATCACCGGAGAGTTGCCTGCTGGCTGGGCTGATGCTCTTCCTCAATACACTACAG
AGAGCCCAGCGGATGCCACCAGGAATCTCTCCCAGCAATGCTTGAATGCACTTGCTAAAG
TTGTGCCTGGTCTTATTGGAGGCAGTGCTGATCTTGCGTCCTCCAACATGACATTGCTTA
AGATGTTTGGCGACTTCCAGAAGGATACCCCTGAGGAGCGCAATGTCCGCTTTGGAGTCA
GGGAGCACGGCATGGGCGCCATCTGCAACGGCATTGCACTGCACACACCAGGGCTCATTC
CATACTGTGCAACTTTCTTTGTTTTCACTGACTACATGAGAGGTGCCATGAGGATCTCAG
CCTTGTCTGAAGCTGGAGTTATCTATGTCATGACCCATGACTCCATTGGTCTGGGTGAAG
ATGGTCCGACCCATCAACCCATTGAGCACTTGGTGAGCTTCCGCGCAATGCCTAACATGC
TGATGTTCCGTCCTGCTGATGGCAAGGAGACTGCTGGGGCATACAAGGTGGCGGTCCTCA
ACAGGAAGAGGCCATCCATTCTGGCTCTCTCAAGGCAAAAGCTTCCTCATCTGCCTGGTA
CCTCAATTGAGGGTGTTGCGAAGGGTGGATACACCATCTCCGACAACTCGAGCGGAAACA
AGCCTGACTACATCATAATGAGCACTGGTTCTGAAGTAGAGATTGCTGTGAAGGCTGCCG
AAGAGTTGACGAAGGAGGGGAAGACCGTCCGCGTTGTGTCATTTGTCTGCTGGGAGCTTT
TTGACGAGCAGTCCGATGAATACAAGGAGAGCGTGCTCCCTGAGGCTGTCACCGCAAGGA
TCAGCATTGAAGCTGGCTCTACCCTCGGATGGCAAAAGTACGTCGGGTCCAAGGGCAAGA
CCATCGGCATCGACAAGTTCGGCGCCAGCGCTCCTGCCCCCAAGATCTACAAGGAGTACG
GCATCACTGCAGAGAACGTCATCGCCGCAGCCAAGAGCCTGTAAGACCAGCACACTCGTT
CAGGTTCTGTCATCATTGGTGCCAGAGAACTACACCACACTTGTGAAGGTCTCGTGCCCA
GAAAGCTTGGAATAACGGAGGGAGAGGAGGATGCCTGCGTCGGAGCGTGAGTGGTATTTC
TAGGCCTGTAATAAACAATGCCTTTTCCATTTGCGTTGTCTTACATTCGATACATATCGC
CCCCCTTAGATGATTCGTGGAGGGGGTGAGCCTGATCAAATTGGGGACTGGTTTTTGTTT
ATTGTTCTACATTGAACTGATACTCGTGCTTGCGATGTTTTCTTTCCTTTCTTCCCCCGT
GATCATCATCTCCATGGGTTCTGCGCCCTTGTAGTTTGCTGTTTGCTCCTCTTCCCCTTA
CTCCCATACAGACGGCTATGATGCCTAGTATCATCAGTCAGTTCAATAAAAATAGAGTGT
TTGCCATCAAAAAAAAAAAAAAAAATTCCTTCTAACTTGTCTATACCGATTTATTTTCTG
AACTGCCATATG

Homology of Contig U35_14496 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g04270.1	744	protein\|transketolase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g51670.1	742
Arabidopsis v10	AT3G60750.1	741	Transketolase \| chr3:22454004-22456824 FORWARD LENGTH=741