- Probe CUST_26391_PI390587928
- Source Contig U35_14498
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26391_PI390587928 | Hv_44K_v2 | CGTCGTACTATGTGCGTGTCTATGTAATGTGCGTGCTTTATCTATAAATTATCCCTCGTT | 686 | GeneList: midnightblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.864 | 0.818 | 0.398 | 1.050 | 1.089 | 1.747 |
| Raw | 2771.783 | 4462.483 | 1849.193 | 8393.460 | 2753.837 | 4875.490 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK356588 | 2841 | 2e-24 | 2782 - 2841 | 100 | 60 / 60 | plus | ABC01689 ABC43248 |
| MLOC | MLOC_70736.2 | 776 | 2e-24 | 628 - 687 | 100 | 60 / 60 | plus | ABC01689 ABC43248 |
| JLOC1 | JLOC1_46957.1 | 1062 | 8e-25 | 857 - 916 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43248 | 437 | 3e-25 | 22 - 81 | 100 | 60 / 60 | minus | ABC43248 |
| Harvest21 | ABC29695 | 493 | 3e-25 | 424 - 483 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01689 | 791 | 3e-25 | 687 - 746 | 100 | 60 / 60 | plus | ABC01689 |
| Harvest35 | U35_44953 | 437 | 3e-25 | 22 - 81 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_30039 | 493 | 3e-25 | 424 - 483 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14498 | 816 | 3e-25 | 687 - 746 | 100 | 60 / 60 | plus |
Contig Sequence (816 bp)
>U35_14498 816 Hv_44K_v2 GCTCAAGCCAGCGCCACTCACACCACGCTCGTCCACTCAAGCTAGCTAGCGCCGTAGTTC ACTTCAGTCCAGTCGGCATGGCGGCTCCGAGGGGTGCGGCACTGGTGCTGGCGATGGTGC TCGCGGCCATGGTGGTGGCGCCGCCTGTGACGGTGCGCGCGGCCATATCGTGCTCGGCGG TGTACAGCACGCTGATGCCGTGCCTGCAGTACGTGCAGCAGGGCGGGACGCCGGCCCGGG GCTGCTGCGCCGGCATCCAGAACCTGCTGGCCGAGGCCAACAACAGCCCCGACCGCCGCA CCATCTGCGGCTGCCTCAAGAACGTCGCCAACGCCGCCCCCGGCGGGAGCGAGATCACCC GCGCCGCCGCGCTCCCGTCCAAGTGCAACGTCAACCTCCCCTACAAGATCAGCCCCAGCG TTGACTGCAACTCGATCCACTGAACGAACTGAAGCGCCTTGGCCCGTGTGTGTCGAAGTA CGTACGTCTGCCCTGCGAGGAGTTCCATGTCCGGAGAATAAATTGCTGCTACTAGTATTG AAGCTTAGCTAGGCCTCGGCGGCCAGATCCGTGTCGTTCTAGCTAGTCGTCGTGTGTGGT TTTAGGGTCGATGGATCTGTGTGTATGCAGTCCTTGGTGTTGTCGGCTCCGCGAGCAGAG CAGAGTGGTGAATTGATATTTGTGTGCGTCGTACTATGTGCGTGTCTATGTAATGTGCGT GCTTTATCTATAAATTATCCCTCGTTAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ATCTGTCTGCTTAAGTTTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_14498 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi2g53570.1 | 122 | 1e-50 | |
| Arabidopsis v10 | None |