barSeed - Barley Seed Development Database

Probe CUST_26390_PI390587928

Source Contig U35_14499

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26390_PI390587928	Hv_44K_v2	TTGAAACGTCTGACTTCAGAGTCCTGTTGAAGGCAGCGTATGTGGAATCCTATATTTTTT	2067	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7100.6	2193	2e-24	2094 - 2153	100	60 / 60	plus	ABC01690 ABC01692 ABC43248
MLOC	MLOC_7100.4	2240	2e-24	2169 - 2228	100	60 / 60	plus	ABC01690 ABC01692 ABC43248
JLOC1	JLOC1_4686.1	2403	8e-25	2183 - 2242	100	60 / 60	plus
Harvest21	ABC01692	2194	3e-25	2068 - 2127	100	60 / 60	plus	ABC01692
Harvest21	ABC01690	768	6e-22	49 - 109	97	59 / 61	minus	ABC01690
Harvest35	U35_14499	2142	3e-25	2068 - 2127	100	60 / 60	plus

Contig Sequence (2142 bp)

>U35_14499 2142 Hv_44K_v2
GCTCTCTCTCGCTCCCGAACCTTCCGAAGTCCAAACCCTAGCGAGCTCCGTTCGGCCTCC
CTCCCAAACCCCAGATCTCACCATCCCACGCCATGGACGACGACTTCGACATCCCCGCGG
GCGACGACATGATGATGGGAGACGGGACGGGTGACTTCGGCGGCGCCGATGGGCCGGGGA
TGAAGGTGGGCGAGGAGAAGGAGATCGGGAAGCAGGGGCTCAAGAAGAAGCTGCTCAAGG
AGGGCGAAGGGTGGGACACCCCCGAGGTCGGCGACGAGGTCGAAGTCCATTACACTGGCA
CCCTCCTTGATGGTAAAAAGTTTGACTCCAGCCGTGATCGTGATGACACATTCAAGTTCA
AGCTGGGACAAGGTCAAGTAATAAAGGGATGGGATGAAGGCATCAAGACCATGAAGAAAG
GGGAAAATGCCCTTTTCACCATTCCTCCTGAATTGGCTTATGGTGAATCTGGTTCACCTC
CAACTATTCCGGCCAATGCCACGCTGCAGTTCGATGTTGAGCTGCTTTCTTGGACCAGTG
TCAGGGACATTTGCAAAGATGGTGGCATATTCAAGAAGATATTGAAGGAGGGAGATAAAT
GGGAGACCCCAAAGGATCCTGATGAAGTCTTTGTCAAATATGAGGCCCGGCTCGAGGATG
GTACTGTTGTGTCCAAGTCTGAGGGGGTTGAATTTACTGTTAAAGATGGACACCTCTGCC
CTGCATTGGCGAAAGCTGTTAAAACCATGAAAAAAGGAGAGAAGGTGCTCCTCGCGGTCA
AGCCACAGTATGGATTTGGTGAGATGGGTAGACCAGCAGCTGGCGAGGGAGGTGCTGTGC
CACCAAATGCTAGTCTTATTATTGACCTTGAGCTGGTTTCATGGAAGACTGTCACAGAAA
TAGGGGATGATAAGAAGATCCTCAAAAAAGTTCTCAAGGAGGGCGAAGGATATGAACGTC
CCAATGAGGGTGCAGTTGTTACAGTCAAAATAACTGGAAAACTTCAAGATGGCACAGTCT
TCTTAAAGAAGGGGCATGATGAACAAGAGCCATTTGAATTTAAGACTGATGAAGATGCGG
TTATTGAGGGTCTTGATCGTGCTGTGCTAAACATGAAGAAGGGCGAGGTTGCTCTTGTCA
CTATTCCCCCTGAATATGCTTATGGCTCGACGGAGTCAAAGCAGGATGCTATAGTTCCAC
CTAACAGTACTGTGATTTACGAAGTGGAGCTTGTATCATTTGTAAAGGATAAGGAGTCTT
GGGACATGGACAACTCAGAGAAGATTGAGGCCGCTGGGACCAAGAAAGAAGAGGGGAATG
CCTTGTTCAAATTGGGCAAATATGCCAGAGCTTCCAAGCGGTATGAGAAGGCTGCAAAGA
TCATTGAGTATGACACTTCGTTCAGTGAGGATGAGAAAAAGCAATCCAAGCAACTGAAGA
TCACCTGCAACTTAAACAATGCTGCCTGCAAGCTGAAGCTGAAAGACTATAAGCAAGCCG
AAAAGCTTTGCACCAAGGTTCTGGAACTGGACAGCCGAAATGTCAAGGCTTTGTACAGAA
GGTCTCAAGCCTACACTCAGCTTGCGGACCTAGAGTTAGCAGAGGTTGACATTAAGAAGG
CACTGGAAATCGATCCTGAAAACAGGGATGTGAAGTTGACATACAAGACCCTGAAGGAAA
AGATCAAAGAAATCAACAAGAAGGACGCCAAATTCTACAGCAATATGTTTTCTAAGATGA
CCAGGCCTTCAGCAGAAGAAAGCAAAGCTTGAACTGGAGCAATACCCAAAGCAAGGATCG
GAGTCCCGGAGTGTGCTGAAGGAAGGGCCAGCTTGTCTGCTTAGCTCTGGTTGGTTAGAA
GACCCATATGCTTGGGAGTTGCTAAAAACTAGAGAAATTTCAGTTGAGGGTGCCAGGCGA
TAATTTTTCTTGTTTAAAAGTTCATGTTTAGACCTTGCATATTATAGTTTGTGCGTTCCG
GGCAATAGGTGGTCCTGCCTTGAGGATCTGTGTTGTGTGCTTTCCTAACGCGCCCTTGTG
CAAGGTATCGTTGCCCATTCGTAGTCGTTGAAACGTCTGACTTCAGAGTCCTGTTGAAGG
CAGCGTATGTGGAATCCTATATTTTTTTTTTAAACAGAGGCA

Homology of Contig U35_14499 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g41390.2	581	protein\|peptidyl-prolyl isomerase, putative, expressed
Brachypodium v1_2	Bradi3g40890.1	611
Arabidopsis v10	AT3G25230.2	562	\| Symbols: ROF1, ATFKBP62, FKBP62 \| rotamase FKBP 1 \| chr3:9188257-9191175 FORWARD LENGTH=562