barSeed - Barley Seed Development Database

Probe CUST_26381_PI390587928

Source Contig U35_26475

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26381_PI390587928	Hv_44K_v2	ACGTTCACACCGGCCCCTAGCTCTAGCTACCAGTACAAAGCACCAGCCAGCCTTGCACGG	125	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362676	1817	2e-24	193 - 252	100	60 / 60	plus	ABC17408
MLOC	MLOC_59489.3	2208	2e-24	166 - 225	100	60 / 60	plus	ABC17408
MLOC	MLOC_59489.1	1955	2e-24	242 - 301	100	60 / 60	plus	ABC17408
JLOC1	JLOC1_38717.1	2014	8e-25	172 - 231	100	60 / 60	plus
Harvest21	ABC25207	388	3e-25	159 - 218	100	60 / 60	plus
Harvest35	U35_26475	566	3e-25	126 - 185	100	60 / 60	plus
Harvest35	U35_12223	389	3e-25	159 - 218	100	60 / 60	plus

Contig Sequence (566 bp)

>U35_26475 566 Hv_44K_v2
CGTACGTGCCCCGTTCTCCGCGCTCTCTCATCTCGCTCTCGCCGAAACCGCGCCGCGCTT
TCTCATCTCGCTCTCTATCTCCGTCCACGCCGCCGCGATCGCCTCCCTCCCTCCCGGAAT
TCGGCACGTTCACACCGGCCCCTAGCTCTAGCTACCAGTACAAAGCACCAGCCAGCCTTG
CACGGCCACCCTGCTCCGCTCTTCCAGTCTTCCCCTGAGACGCACGGTCGGCAAGGACGC
CCGTTTCTTGGCTGGCGCGGCAGGCCGGCACCGGGGCGTGAACCGAGCTCCTCTTCTAGG
CGGCAGCTCACCGTCACCGGAGCACGCGCGAGGAGCCGAGAGATGAGCTGCCTGGGGTGG
CTCAAGAGGAAGAAGGGGTCCAGGAGCGGGAGGCGGGGCTCGTCGGCCTCGGCCCCGGCC
ACCACGATGACGACCATGACCACCACCACCACCACCACCGGGTCGGCGGTGAGCACGAGC
CGGTCGGACGACTCCGGGGCGGGGCGGCAAACAACCAGCAAGTCCACGGGCTCCGCCTCC
TCGCAGCCGAGCATCTCCTCGCTCTA

Homology of Contig U35_26475 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None