- Probe CUST_26377_PI390587928
- Source Contig U35_26478
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26377_PI390587928 | Hv_44K_v2 | ACTCGAGAAGGTTACTGAACAACCATCATCACCTAACATTGACAGGATGGATGTGCATGA | 686 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.549 | 2.030 | 1.400 | 0.863 | 0.589 | 0.458 |
| Raw | 22.412 | 40.872 | 27.387 | 23.404 | 5.252 | 4.490 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK369539 | 3526 | 2e-24 | 1270 - 1329 | 100 | 60 / 60 | plus | ABC12222 |
| MLOC | MLOC_64033.1 | 3147 | 2e-24 | 849 - 908 | 100 | 60 / 60 | plus | ABC12222 |
| MLOC | MLOC_64033.6 | 3082 | 2e-24 | 811 - 870 | 100 | 60 / 60 | plus | ABC12222 |
| MLOC | MLOC_64033.2 | 3546 | 2e-24 | 996 - 1055 | 100 | 60 / 60 | plus | ABC12222 |
| MLOC | MLOC_64033.3 | 3786 | 2e-24 | 1236 - 1295 | 100 | 60 / 60 | plus | ABC12222 |
| MLOC | MLOC_64033.4 | 3864 | 2e-24 | 1314 - 1373 | 100 | 60 / 60 | plus | ABC12222 |
| MLOC | MLOC_64033.5 | 3550 | 2e-24 | 1000 - 1059 | 100 | 60 / 60 | plus | ABC12222 |
| JLOC1 | JLOC1_42005.5 | 3641 | 8e-25 | 1219 - 1278 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42005.4 | 3417 | 8e-25 | 995 - 1054 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42005.3 | 3249 | 8e-25 | 827 - 886 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42005.2 | 3413 | 8e-25 | 991 - 1050 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42005.1 | 3250 | 8e-25 | 828 - 887 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC22120 | 749 | 3e-25 | 687 - 746 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_26478 | 749 | 3e-25 | 687 - 746 | 100 | 60 / 60 | plus |
Contig Sequence (749 bp)
>U35_26478 749 Hv_44K_v2 CGGTGGGGCGGCCGGCTCTAGNAACTANNGTGGATCCCCCGGNGCTGCAGNGAAAAAGTT AGTAATCTGATTGATCTGGATGACAAGATTGAGGGAATAGCGAAGCAATTAAAAACCATG AACAATGTCATACAGCAGATAGGCACGCCGTACCTTGCCGACAAAGTCGTAAAGGGTTGG ATTGGGGAGGTGAGGAAGTTGGCCTACCATGTCGAGGATGTGATGGACAAATACTCGTAT CACTCTCTTCATGTCGAAAAAGGGTTTCTGAAGAAGTGCCTCAAAGGATCACATTATGTC CGGGTTTTCAGTCAAATTGCTGACGAGGTAGTCAAGATTGAGAAGGAGATCAAGCAAGTT ATCGAACTCAAGGAGCAGTGGCTCCAACCATCCCAGCTTGTTCATGACCCTCTCACTGAG ATGGAAAGACAACGGTCCCAAGATAGCTTCCCTGAACTTGTGAAAGATGAAGATCTTATT GGAATTGAAGATAACAGGCGAATGATGACTGAATGGTTGTACTCGGATGAGATGGAGACT ACAGTGATAACTGTGTCAGGTATGGGTGGGTTGGGAAAGACAACCCTCGTCACAAATGTG TATGAACGTGAAAAGGTCAACTTCCAAACTAGTGCATGGATGGTTGTGTCTCAAACCTAC ACTTTGGATGCTCTGTTGAGGAAGTTACTCGAGAAGGTTACTGAACAACCATCATCACCT AACATTGACAGGATGGATGTGCATGACTT
Homology of Contig U35_26478 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g11990.1 | 858 | 8e-102 | protein|NB-ARC domain containing protein, expressed |
| Brachypodium v1_2 | Bradi4g21890.1 | 909 | 1e-105 | |
| Arabidopsis v10 | None |