barSeed - Barley Seed Development Database

Probe CUST_26357_PI390587928

Source Contig U35_26484

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26357_PI390587928	Hv_44K_v2	GTGTAAATTTGTATGCACTGGTTGACTAATGAAGTTTCCAGTGCCTTTTCCATTAGAAAA	735	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.117	0.220	0.738	1.250	1.311	1.446
Raw	5.503	19.732	61.094	157.613	58.356	70.480

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71068.1	990	2e-24	113 - 172	100	60 / 60	minus	ABC25517
JLOC1	JLOC1_47199.1	889	8e-25	107 - 166	100	60 / 60	minus
Harvest21	ABC25517	808	3e-25	14 - 73	100	60 / 60	minus	ABC25517
Harvest35	U35_26484	808	3e-25	736 - 795	100	60 / 60	plus

Contig Sequence (808 bp)

>U35_26484 808 Hv_44K_v2
GCAACATCGCCGCTGGCTAGTGCCACTCGCCCGCACTGGCCACCACCTCGCCCGCCGGCC
CCTGGCTCGGCCCCCACCACCTCGCCCGCCCGTCATCACCGGTCCCTCTCCTCTAGGCCC
CACCACCATGGCGCCAGCGGCCCCTGACAGTCCACCGTCACCCCGAGCAGCCATCGGCGG
CCGGCCATGGCGCCGCAGCCTCGGTCCTCATCGTCGTTTGAGCAGACGCAGGTCGCCGAC
CATGGCGTCGCCGGCCCTGACCCTCCCCGTCGCTCGAGCAGGCGCATGCGACCGTCCATG
GCGCCGTCGTCCCGGCCCTCCCCGTCTCTCGAGCAGCCGCAGGCGACTGGCCATGGCATC
GTTGGCCCTGACCCTCCACGTCGCTCAAGAAGCCGCAGGCGGCCCGCCTTGGCCCTCCCC
CGTCGCCTGAGCAACTGCACGTGGCCGACCCCGTCCTTTCCCATCGCCTCGAACAACCTC
ATGTGGCGGCCGCTGCTCACCGGCGCCGCCGGCTCTGACCCCTTCCCCCTCTTTACCCCG
GCCCTCGTCTCCCCGAGCAGGGCCAGTACTTCGGCCATGGCGTCCCTGTGAGCTCGGTGA
TGTGCCGCACGTGGAACCATGACGATGCAGTGGAGAAGAAAACCAGGGACCGGATTGTTT
TTTATCTGTAGTTCTAGGTTGCTTTAGTAATACGTGAGGACTGCTTTAGTACTTGTTCTA
ATGTGAGGTTCCTTTGTGTAAATTTGTATGCACTGGTTGACTAATGAAGTTTCCAGTGCC
TTTTCCATTAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_26484 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None