- Probe CUST_26350_PI390587928
- Source Contig U35_38460
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26350_PI390587928 | Hv_44K_v2 | TTTTCAGTTAATAAGTGGTAGAGACCAAGGTTTAGATGATTGCTCACCGACAAAGCTGCG | 606 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.297 | 0.248 | 1.052 | 1.785 | 1.503 | 1.867 |
| Raw | 3.807 | 3.843 | 24.295 | 69.847 | 19.612 | 27.230 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365395 | 3692 | 2e-24 | 3287 - 3346 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.24 | 1868 | 2e-24 | 1458 - 1517 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.7 | 2964 | 2e-24 | 2554 - 2613 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.1 | 2509 | 2e-24 | 2431 - 2490 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.2 | 2630 | 2e-24 | 2552 - 2611 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.23 | 1988 | 2e-24 | 1576 - 1635 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.3 | 2735 | 2e-24 | 2323 - 2382 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.4 | 3687 | 2e-24 | 3275 - 3334 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.17 | 3153 | 2e-24 | 2727 - 2786 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.18 | 2911 | 2e-24 | 2485 - 2544 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.15 | 2751 | 2e-24 | 2325 - 2384 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.22 | 2163 | 2e-24 | 1751 - 1810 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.16 | 2746 | 2e-24 | 2440 - 2499 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.21 | 2309 | 2e-24 | 1768 - 1827 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.20 | 3025 | 2e-24 | 2484 - 2543 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.12 | 3054 | 2e-24 | 2513 - 2572 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.13 | 2986 | 2e-24 | 2445 - 2504 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.25 | 1294 | 2e-24 | 986 - 1045 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.8 | 2875 | 2e-24 | 2449 - 2508 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.9 | 2761 | 2e-24 | 2335 - 2394 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.10 | 3004 | 2e-24 | 2578 - 2637 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_10252.11 | 2830 | 2e-24 | 2404 - 2463 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_6692.3 | 2840 | 8e-25 | 2313 - 2372 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6692.2 | 2800 | 8e-25 | 2273 - 2332 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6692.1 | 2876 | 8e-25 | 2349 - 2408 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34440 | 737 | 3e-25 | 607 - 666 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38460 | 737 | 3e-25 | 607 - 666 | 100 | 60 / 60 | plus |
Contig Sequence (737 bp)
>U35_38460 737 Hv_44K_v2 CACAGCTATGACCGAATTCAGCCCACACATTTACTGGAGCATATCTTTGCTGGGGGAAAG AGAACCGGGAGGCTCCGTTGAGGACCTCCTGCCCACCGGGCGTGCCTCCTGATTTTGTCA GCAACTTCGAGGTCAGATCTTTCGACGGGTGCGCGAACCCTCACCTTGGCCTCGCCGCCA TCGTCACCGCCGGCATCGACGGATTAAGGAGAGGCCTGAAGCTGCCTCCACCAACTGAAC TGAATCCTGCAGATTGCGCTTCACACGAGAGGCTACCGCACGACTTGCTGGGATCTGCAG AGGCACTTGCGGCGGACGAGATTTTTCATGAACTGATGGGTGATAAACTTGTTACTTCTG TTATAGCTATGCGAAAGGCTGAGATCGAGCATTACGCGAAGAACCCAGTGGCAGTCCACC ATCTCATTCACCGTTACTAGCGATGCCTATTTGCCTTGCTTGGTGATCGATCGGGATCGG GTTGAAAAAGTACTGCTCTGCTTTCAGACGTTGCTCTGTTCTCAGCACTTCACATGTATG TGGATGAGTAAATGTTGTCCAGATGATTGCTCATGATCTCGGCAATGCACTTGCCGTTGT CAGACTTTTTCAGTTAATAAGTGGTAGAGACCAAGGTTTAGATGATTGCTCACCGACAAA GCTGCGCCAGGCCCTGGGATGGTGGCAGCAGGGCCATTTTCACCCTCCGCCCTTCCCCCA GATCTGGTCCCCGGCAG
Homology of Contig U35_38460 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g31820.1 | 846 | 3e-62 | protein|fluG, putative, expressed |
| Brachypodium v1_2 | Bradi3g27877.1 | 843 | 4e-65 | |
| Arabidopsis v10 | None |