- Probe CUST_2634_PI390587928
- Source Contig U35_27087
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2634_PI390587928 | Hv_44K_v2 | GTTAGAGTGGGGCTTGTAACCCCATTATTATGCAATAAACGTGGGTTGGTCGGTCGTAAA | 427 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.835 | 1.555 | 1.937 | 1.357 | 0.519 | 0.504 |
| Raw | 211.336 | 609.587 | 645.759 | 690.175 | 96.173 | 101.478 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK354790 | 2063 | 2e-23 | 1993 - 2050 | 100 | 58 / 58 | plus | ABC24256 |
| MLOC | MLOC_63376.1 | 2271 | 2e-23 | 29 - 86 | 100 | 58 / 58 | minus | ABC24256 |
| JLOC1 | JLOC1_41503.1 | 2294 | 1e-23 | 2111 - 2168 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC24256 | 501 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus | ABC24256 |
| Harvest35 | U35_27087 | 501 | 3e-25 | 428 - 487 | 100 | 60 / 60 | plus |
Contig Sequence (501 bp)
>U35_27087 501 Hv_44K_v2 GTCTACGAGCCTCAATGGCATTGTTCCTCAGCATCCCGTCATGACCTTCTCGCCGTCGCC TCCTTCGCGCAACCAGCACCTGGCGTCGCCAAGATCATCGACTTCCGCGCTTCTTCCCCC AAGGACCTGCTCTTCCATCATCACCCTGGATTACCCCAGGGTAAGCTCGGTCAAGAAGTC GCCTTCCGGTATCCTGCGGAGACCTGGCGTCGAGGGTTTTTGATTGTCCATACATGGTCG GATTTCTTCTCTTTGCCTTGGATTTATTTGTTGTTTTGGTTAGCCTAGCGAGTGGTCTCA GTGCTATGTGATATGTATATGTTGGAAAGACATCTGAAAAAAGGGCAGAGTGAAGTGTAG ATAGTAGAACCAGCTTTGTAGATACTTGTCGTTCTCTGATTGGATGGGGGTCATGGAAGC AGTGTGTGTTAGAGTGGGGCTTGTAACCCCATTATTATGCAATAAACGTGGGTTGGTCGG TCGTAAAAAAAAAAAAAAAAA
Homology of Contig U35_27087 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |