barSeed - Barley Seed Development Database

Probe CUST_26343_PI390587928

Source Contig U35_38467

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26343_PI390587928	Hv_44K_v2	CCATCTGATATTTGTCAAAAATCTTGCCATACTTGAGTTGCAATTTTACCGAGCTTGAAG	167	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72321.3	2071	3e-22	233 - 291	98	59 / 60	minus	ABC26431 ABC34448
MLOC	MLOC_72321.7	1683	3e-22	186 - 244	98	59 / 60	minus	ABC26431 ABC34448
MLOC	MLOC_72321.2	1700	3e-22	341 - 399	98	59 / 60	minus	ABC26431 ABC34448
JLOC1	JLOC1_48094.3	1673	1e-22	1287 - 1345	98	59 / 60	plus
JLOC1	JLOC1_48094.2	2064	1e-22	1678 - 1736	98	59 / 60	plus
Harvest21	ABC34448	523	3e-25	168 - 227	100	60 / 60	plus	ABC34448
Harvest35	U35_38467	523	3e-25	168 - 227	100	60 / 60	plus

Contig Sequence (523 bp)

>U35_38467 523 Hv_44K_v2
CTTTTCCCTCGAGTTTCCGTTTTCCGGATCCATAGGCCTCAGACAGCAGTATGCCATGCT
GGGTAATAGTCTTAGTGTAGCGGTTGTGGCTCCTTTGCTGCGCTATCTGTTTGCCGGGGC
ATAGAGAAGTTCTCAATCATTTGGCAGGTGATATTCACCTTGGTGCGCCATCTGATATTT
GTCAAAAATCTTGCCATACTTGAGTTGCAATTTTACCGAGCTTGAAGACTTGCGATCAAT
CTGCCGATGGCCTAGCAGGAATTATAGTGAAGAGGTGGATGCGTGCAAAGTAAGGTGGTA
TGTATGGACGAAGCTCAGCCTTTGGATCTACTCCGTATACAAATACCAGTCCAACGTTGT
GCCTTTCACCCACAACCATATTTTTGAGGTGCAGTTAGTAATGTGATATTTTTTTAGGGC
AAGTGTAATTTGATACTTTGTGATGACATATCGTATTGCGCGCAAGAAATGGATGCAAAT
CAAATCCCACTGTACCTGGACANAANAAAAAAAAAAAAAAAAA

Homology of Contig U35_38467 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None