barSeed - Barley Seed Development Database

Probe CUST_26325_PI390587928

Source Contig U35_18658

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26325_PI390587928	Hv_44K_v2	GTATTCTATTTCTATATATCCTGTAGAATTTGCCTAGCTTTTGTGGCAGCTTGGTGCCAC	1610	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34537.1	3924	7e-23	28 - 87	98	59 / 60	minus	ABC08053 ABC10412
JLOC1	JLOC1_22281.1	3936	4e-23	3840 - 3899	98	59 / 60	plus
Harvest35	U35_18658	1693	3e-25	1611 - 1670	100	60 / 60	plus

Contig Sequence (1693 bp)

>U35_18658 1693 Hv_44K_v2
AAAGCTCCAAATGAAGTGAACTCATTTATGTCTAATCCTGCTGAATATGCTGCTGCTATG
AGAAAGGCAGGTGATGCTCAAGCCAGGGAGTTGTTGGAGCGTGTACGTGAGTGCCTTGAC
AAAGAGCGATGTGATAAATTTGAAGACTGCATAGCCTGGGCAAGACTAAAGTTTGAAGAT
TACTTCTCTAATCGTGTGAAGCAGCTAACATTCACATTTCCTGAAGATGCTGGCACTAGC
ACTGGTGCTCCTTTCTGGTCTGCCCCTAAGCGTTTCCCTCACCCGGTGCAATTCTCAGCT
GTTGATTCATCTCACATTCAATTTATACTGGCTGCATCCATATTGAGAGCCGTGTCTTTC
GGGATCCCCATACCTGACTGGGCGAAGAACATGGGTAATCTGGCTGATGTAGTAAGTAAG
GTTGCAGTGCCTGAATTTGAGCCAAAGAGTGGGGTTAAGATTGAAACAGATGAGAAGGCT
ACTAACCTCTCCAGTGCCTCAGTTGACGATGCTGCTGTTATCGAAGACCTTTTAACCAAG
CTGGAAGCATGTGCCAAGAAACTACCTTCAGGATTCCAAATGAAGCCTATTCAGTTTGAG
AAGGACGATGATACAAATTTCCATATGGACTTGATAGCTGGTCTTGCTAATATGCGTGCG
AGAAACTATGGTATTCAAGAGGTTGACAAGCTGAAGGCGAAGTTCATTGCAGGAAGAATC
ATTCCAGCTATTGCAACTACGACAGCCATGGCCACAGGTCTTGTGTGCCTTGAGCTTTAC
AAGGTTCTTGCAGGTGACCACCCAGTTGAAGACTACCGCAATACATTTGCCAACCTGGCA
CTACCAATGTTCTCTATGGCTGAACCTGTTCCGCCCAAGGAGATGAAGCATCAAGACATG
AGATGGACAGTGTGGGACCGATGGTCTATCAAGGGCAACATTACTGTCGCAGAACTCCTG
AAGTGGTTAAGCGACAAGGGCCTGACTGCTTACAGCGTCTCCTGTGGCACATCCTTGCTG
TACAACACCATGTTCCCGAGGCACAAGGATCGACTGAAGAGGAAGATGGTGGATGTCGCC
CAGGAGGTGGCTAAGGTAGATGTTCCAGCATACAGGAAGCACTTTGATGTTGTTGTGGCT
TGCGAGGATGACGACGGAAACGACATCGATATTCCTCTTATCTCCATTTACTTCCGATAG
GCAGGTGCTGTCACTCTATTGTGAGGATGGATGAAGACTGTGCAAAGAATTCCTGTGGAG
AGATGTTTGAAACATTCCAAAACCCTTCTTAGCCGGTTTGGTTTTCTTATGCATTGGTAG
CCTAGTGATCGCTAATGGTGTTAGCGTCCATCTCCCTAGCGTTTTGTGTGGGTCCTTCGG
CTCTGTTGTTGCATGCCAACTATTTGAAGGTGTGCGATGCTGTCTGATGTTTTGATGAAT
GCCATAGCCTGTTATCCACAGCGTAGCATTAGATTGATATTTTGGGATTGTTTGATGATA
TTTTTGGGATTGCTTGATGATTAGTTCCGGTCACTAATTGTCGTTTACTTTGTACCTCAT
TGTGATCATCACTTTCTCGTGACACAGTTCAACCTGCTAGTTTCCATGATGTATTCTATT
TCTATATATCCTGTAGAATTTGCCTAGCTTTTGTGGCAGCTTGGTGCCACNTTCATAAAA
AAAAAAAAAAAAA

Homology of Contig U35_18658 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g18380.3	1065	protein\|ubiquitin-activating enzyme, putative, expressed
Brachypodium v1_2	Bradi1g16680.1	1051
Arabidopsis v10	AT5G06460.1	1077	\| Symbols: ATUBA2, UBA 2 \| ubiquitin activating enzyme 2 \| chr5:1970239-1974382 FORWARD LENGTH=1077