barSeed - Barley Seed Development Database

Probe CUST_2631_PI390587928

Source Contig U35_39061

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2631_PI390587928	Hv_44K_v2	TCCTAGTGATAAGATCCTTACAAGCAAGACAATAAGTGAATGGTGTCAACTAGTATTAGA	605	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248684.1	2397	2e-24	627 - 686	100	60 / 60	plus	None
MLOC	MLOC_7578.1	1122	2e-24	687 - 746	100	60 / 60	plus	None
JLOC1	JLOC1_5007.1	1170	8e-25	629 - 688	100	60 / 60	plus
Harvest35	U35_39061	668	3e-25	606 - 665	100	60 / 60	plus

Contig Sequence (668 bp)

>U35_39061 668 Hv_44K_v2
CCCCGCCGTCCCCTCCCCACGCGAGCGGCGGCGATGGCGAAGAAGCTCGGGAAGAAGGCC
CGCAAGTTCGCGCACAAGCACCTCCAGGGCGGCGCCAAGCGCAGCCGCAAGCTCCGCTCC
CAGTTCAACCGCCGCACCCGCAAAGATGGGAAGGGCCGGGAGGACGACGACCGCCTGGAC
GCCGACGGCGGCCAGGAGACCCGCCGGACCGACCCCGCCATGAGCATGAACGACGATGTA
GCTACTTTGGCCGACTGCTTAGAGTTTCCAGAAGATGAGGATGAATTAGACGGGGATCTG
TCTGACAGTGATGGCTATCTTTCAGAGGATCCTGAGTGTCTGTACTACTCTGACAGTGAT
GATGACAATGTTCTCAAAGAGTGTATTGTACAAGATGATCTTGACGAGCAGAACAATGAG
ATGCGTTTAGCTGTAAAGAAGCAAAAGAAAAAGTTGAAGAAGTTGCTGGATAAGGACCCT
AAGTTCGCAAACTTCCTTGAGAAATGGCAATTGGAATTGGTGAACCATGAAAGTAAAGAA
GATTCAGATGAACAAGATGAGATGGATTCCGTGGACGATGCAGTTGATTCTGGTGATAAA
GATCCTCCTAGTGATAAGATCCTTACAAGCAAGACAATAAGTGAATGGTGTCAACTAGTA
TTAGAGGA

Homology of Contig U35_39061 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g01080.1	674	1e-63
Arabidopsis v10	None