barSeed - Barley Seed Development Database

Probe CUST_26319_PI390587928

Source Contig U35_20970

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26319_PI390587928	Hv_44K_v2	AATCGAATTATGTAATAGTATTAACTTTTAGTTTGCGATCAAGATAAAACGTGGCGGCCG	544	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.465	2.044	1.291	0.791	0.362	0.410
Raw	1275.488	1689.594	921.658	880.561	141.363	176.686

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_8905.1	1366	8e-25	1210 - 1269	100	60 / 60	plus
Harvest21	ABC15097	623	3e-25	544 - 603	100	60 / 60	plus	ABC15097
Harvest35	U35_20970	613	3e-25	545 - 604	100	60 / 60	plus

Contig Sequence (613 bp)

>U35_20970 613 Hv_44K_v2
AGCCCGCACCTGCGGAAGTGTCGACCTTCAACCTTTTAAGGCACCAAAGCCAGTGTCAGC
AGTCAATACACCCACCGGGGACAACGGTGATTCATCCACCGTAGTCAACAGTGATTCAAC
CACCGCAGTCAACGGGTCAGAGCAGTCTAATGCTGAGCTAAGCGACCGGGTTGTGTTTCT
TGAGAAGAAGATTGCAGAACTTGAGAGGCGGGCTAAAGCTAGAGGTGAATCTCAGGAGGA
ATAAACTAACAAGTAAGTTTCTGACCGAGCACGCGAAATCCAAAGAAGCACTAGGTATTG
CGTTTGTAACCCGCGTCTGGTGGCCATAAAGGGATATCTTGCGCGGGCAAATCGATATAG
TACCAAGATTTGACTTGGACTAGCCAATTTTGTGAGCATGTGTTGCAAATGCTGTTTCGG
GCGAATAAACCGTAGGTATCCTGGCAGTTAAAATCGCCAGAATGTTTGTTGGATTAAGCT
TAGTGATGCTGGCTGAGAAGAAACCAGAGGGTGGTTATTATTATTGTACCACTTGACATT
TGAAAATCGAATTATGTAATAGTATTAACTTTTAGTTTGCGATCAAGATAAAACGTGGCG
GCCGAAAAAAAAA

Homology of Contig U35_20970 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None