barSeed - Barley Seed Development Database

Probe CUST_26316_PI390587928

Source Contig U35_20973

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26316_PI390587928	Hv_44K_v2	CCCAACTGGAAATTGGTCATCTGTGGGGTAGTTGATTGATGGATACCATCTTGCAAAAAA	860	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.143	1.379	1.180	1.055	0.440	0.484
Raw	336.534	632.677	471.663	655.732	97.995	114.800

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62283.1	1770	3e-22	5 - 60	100	56 / 56	minus	ABC15918
JLOC1	JLOC1_40747.1	1882	1e-22	1658 - 1713	100	56 / 56	plus
Harvest35	U35_20973	931	3e-25	861 - 920	100	60 / 60	plus

Contig Sequence (931 bp)

>U35_20973 931 Hv_44K_v2
GCATGGTGCTCCTTCCAATGAAGCAAAGGCTAGCCTCTTGAACCGCTTCTTGGAGTCCAA
AGAATACCTGACAAGAAAGGAGAATCTAGTGAAGAAGACTGGAAGCAAGAAAGTGTTCAC
TCTGAAGGGGAAAAAGAAAATATTCAAGGCCAAACAACCTAGGAAAAAGAGAAGATTGCA
AGCATTATGGTTCTATCTAGTGGCTGCTTTTGACCAGAAGGGACAACCTCCTTTACCACA
GCTACCTACAAAATTTTTGAGGATCAAGGATGTCGAATTGCCTGCTTCCTTCATACAAAA
GTACCTTGTGCAGAAACTCAATCTTTCAAGTGAAGCTGAGGTGGAGTTGATGTGCGTTGG
CAAGAAAGTGGACCCAGCAATCACCCTACATGACATAATGGAATGCTATCTCGACAAAGG
ACCGAACGGTTGGGTGCGGTCGTCCGTGGGCTCCCCTGCCACCGGGTTCATCACGACGGT
GTTCTACAGCAGGCCGGAGCTGCCCACACCAACCACCACCACCACCACCTGACTGATCCA
GAGCGCCGCCTCATGTCTGAACAAGTCCCGCCTCATTCCAGTCGTCTATTTCGGAGCCCT
CTGGTCGGTGCTAGCATTGATGCCAACCTTGCGAGGCTCGGCTCACCTTGCAACATGTAG
ATAGATGTTCGATTTACTTGTGTTGTTCGTTACCAATTTTTTCTTCACCTGATGGAGTAG
TTGTACCTATGCGCTTTGTAATCCTGTGTTGAGTGCTGCTGTAAACAGTACCTGAAGCCT
TGAGGGTATATGCCTTTGTAATGTTGTGGTGCTATTTTATTTGTAAGCTATGTCACAAGT
TGGCGTTCACAAACAGCTCACCCAACTGGAAATTGGTCATCTGTGGGGTAGTTGATTGAT
GGATACCATCTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20973 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g58390.1	386	1e-62	protein\|zinc finger, C3HC4 type domain containing protein, expressed
Brachypodium v1_2	Bradi1g05390.1	386	3e-75
Arabidopsis v10	None