barSeed - Barley Seed Development Database

Probe CUST_26311_PI390587928

Source Contig U35_20979

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26311_PI390587928	Hv_44K_v2	CCCCTTTGGTTATTGTCGCAACTTTATGTTAATAAGAAAGAACCAAAGCTTTACTCTAAC	908	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.076	1.513	1.284	0.922	0.317	0.305
Raw	166.434	368.729	271.818	308.853	36.367	38.840

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72682.1	1865	2e-24	1 - 60	100	60 / 60	minus	ABC16982
MLOC	AK371216	4530	7e-23	4474 - 4530	100	57 / 57	plus	ABC16982
JLOC1	JLOC1_48356.1	599	8e-25	539 - 598	100	60 / 60	plus
Harvest35	U35_20979	985	3e-25	909 - 968	100	60 / 60	plus

Contig Sequence (985 bp)

>U35_20979 985 Hv_44K_v2
GGCCAGACGTCACTGAAGGAAATGCAGGAAGGGCTAGAGGGCAAGGAGTCCCTGCTGAAC
GGTCAAAAACAGTTACTGTTGAGGAGCAGAGGTTAGAGAGTGCATGGCTCCAAGCTGTTG
AAAAGCACACACCCGGAGCGAGACCTGAGAAATATCAAGCTGTGCCACAAACTGGTGGTG
GTCAGTACCACAAGAAGTCCTCACTGGCTAGTGTTGTGCCCTCAAGGAATATTGACAAGG
ATTTGAGTAATGGATTGAAAGCTTTAAAGATCAGTGAGAGTCATGGTTCCCAGAAGGGTC
CGAATGTAGGAATAGAGAATGGATTTGTGATATCACCAAGCCTCTTGCACAGCAATAATG
AATTGGCAAATTGCGACAACGAGAGTGTGGTCTCCGAGTCTGGAGCACCAGGATGTCATG
GCCTCTTCCCCTGCTGGAAAACTGAAAAATCAAAAAGAGGAAAGGCAAAACGGCAGACTC
GTTTGAAGCCATCTTAATCTGGGAAGTTATAAAATGACCACTGTTGTTCGAGCTGCGGAA
AACAGTTGCGAATAGCAAGAGAACACAAGGAACCAGTTGTCAAGGTCGCGGCTGTGACCT
CGCCTGATGCTCTCTGCTGATGCAAGATGGCTGCATTTTCGTCACAACGACTTGGTAGAG
CTCAAAGTAGCAGAACTGTCGATGTGAATGCAAATTTCAGAAAACCGAAGGATAGTTGAT
TGTTTACACTTTACACCCTTCTTGTCAATGCACCCTTCTTGTATTGTTTACAGAACATTT
TGATTTGTCCAGTGTTGCCCGCAAGCATAGGATAGTCGATTGAAGAATCTCAATCTAGGT
TTCTAGTGCATTGTTTCTTGATGATAGTTGCTTCTATTTCAATGTATTTGACACCAATTC
AGTACACACCCCTTTGGTTATTGTCGCAACTTTATGTTAATAAGAAAGAACCAAAGCTTT
ACTCTAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_20979 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g13990.1	1125	9e-58	protein\|AAA-type ATPase family protein, putative, expressed
Brachypodium v1_2	Bradi4g21057.1	1181	5e-85
Arabidopsis v10	None