- Probe CUST_2630_PI390587928
- Source Contig U35_39062
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2630_PI390587928 | Hv_44K_v2 | CTAGCTGGATTTTGGGAGACAGTGCGTTCTTGTGCGTGTGGTGATGGAGGCGCACATGGA | 32 | GeneList: plum2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.040 | 0.154 | 1.212 | 1.681 | 0.960 | 1.352 |
| Raw | 5.472 | 38.297 | 255.375 | 546.148 | 114.584 | 173.243 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_72289.1 | 1621 | 2e-24 | 979 - 1038 | 100 | 60 / 60 | minus | ABC26435 |
| JLOC1 | JLOC1_48074.1 | 1442 | 8e-25 | 1014 - 1073 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_39062 | 316 | 3e-25 | 33 - 92 | 100 | 60 / 60 | plus |
Contig Sequence (316 bp)
>U35_39062 316 Hv_44K_v2 GGAGAGACTACGGAGAGATACTACTGTGGTAGCTAGCTGGATTTTGGGAGACAGTGCGTT CTTGTGCGTGTGGTGATGGAGGCGCACATGGAGCGGGCGCTGCGGGAGGGGGTGACGGAG GCGGAGCGGGCGGCGCTGGAGGGGACGGTGCGGGCGCACCACACCTTCCCGGGGCGGGCG CCGGGGGCCACCTGCACGTCGCTGGTGGCGCAGCGCGTGGCGGCGCCTGTGCGCGCTTTG TGGCCCATCGTGCGCAGCTTCGGCAACCCGCAGCGGTACAAGCACTTCGTGCGCACCTGC GCGCTCGCGGCCGGCG
Homology of Contig U35_39062 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |