barSeed - Barley Seed Development Database

Probe CUST_2629_PI390587928

Source Contig U35_39063

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2629_PI390587928	Hv_44K_v2	ACTGAATGGACAGAAGATATCTCTAGAGCTCTAATATGCTGCACTATACCAAAGAAAAAA	560	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.977	2.646	1.208	0.757	0.342	0.283
Raw	227.255	229.357	96.011	90.559	14.903	13.657

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370475	3259	2e-24	132 - 191	100	60 / 60	plus	ABC29973
MLOC	MLOC_69715.2	4158	2e-24	3014 - 3073	100	60 / 60	minus	ABC29973
MLOC	MLOC_69715.4	4264	2e-24	3111 - 3170	100	60 / 60	minus	ABC29973
MLOC	MLOC_69715.5	4101	2e-24	2952 - 3011	100	60 / 60	minus	ABC29973
MLOC	MLOC_69715.3	4274	2e-24	3113 - 3172	100	60 / 60	minus	ABC29973
MLOC	MLOC_69715.1	4314	2e-24	3161 - 3220	100	60 / 60	minus	ABC29973
JLOC1	JLOC1_46216.2	4082	8e-25	975 - 1034	100	60 / 60	plus
JLOC1	JLOC1_46216.1	4190	8e-25	1069 - 1128	100	60 / 60	plus
Harvest35	U35_39063	693	3e-25	561 - 620	100	60 / 60	plus

Contig Sequence (693 bp)

>U35_39063 693 Hv_44K_v2
ATCTTGCTGTTGCTGCTCATCCTCCTGGTTCTTCTTACCATAAAATTGGTATGCCACTGA
TTGGCAGAGGCATCATTCAAGTTTGGTGTATCGTAGCACCCTTTGAAGAGGCACGTACTA
ATCAGTCAACGCTTGCATACAGTAATAGCAATCGTAGAGGAAGGCCTAGAAAAATACCGA
ATGAGCACAATTCAATTGAGAGTTCATCAGTTCCTCGAAAACCAATAGGGGGACCAAGAA
AGATAAAACTGACGACTAGGGATGATCACGCAGAACCTAGTCTGAAAAAACCAAGGGATC
ACACAGAACCTAGTCTGAAAAAACCAAGGGGCAGACCAAGAAAATATCCACTGTCAGCTA
CCAAAGCAGTAGATTCAACAAAAAATAGCGGAAGTCAAGGTTCTAGTTTTGTTGACCCTC
TTGTCACTTCAGGAGTTATTCCAGGCGATCTTGCGTTATCTTGTGCTATACCATCTGTGA
AGTCTGTGGACTCAGCTCCAAAAAGAGGTAGGGGTCGACCTAGGAAAATCCCAATTGACA
AAATAAAGTGTTCGCCTGACACTGAATGGACAGAAGATATCTCTAGAGCTCTAATATGCT
GCACTATACCAAAGAAAAAAAGGGGGAGGCCCCGGAAATATCCACCCCCAAGCAGCAGCA
AGCATGTTTCTGGCACTGATAATGAATTTGAAA

Homology of Contig U35_39063 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g55477.1	1198	1e-73
Arabidopsis v10	None