barSeed - Barley Seed Development Database

Probe CUST_26291_PI390587928

Source Contig U35_44938

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26291_PI390587928	Hv_44K_v2	GTGCCATTAGCATTCATATTAGGACAATATGCTGTCAAGAAATCGCATGCAAAATCAAAA	8	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67650.3	1157	3e-21	1034 - 1090	98	56 / 57	plus	None
MLOC	MLOC_67650.2	1548	3e-21	1460 - 1516	98	56 / 57	plus	None
JLOC1	JLOC1_44688.1	1644	2e-21	1469 - 1525	98	56 / 57	plus
Harvest21	ABC43217	507	3e-25	9 - 68	100	60 / 60	minus
Harvest35	U35_44938	507	3e-25	9 - 68	100	60 / 60	minus

Contig Sequence (507 bp)

>U35_44938 507 Hv_44K_v2
TTTTTTTTTTTTGATTTTGCATGCGATTTCTTGACAGCATATTGTCCTAATATGAATGCT
AATGGCACTCGAGTTACAAATTCACTTCAGTTGCAGAGGTGATGGACTACTATTGTGTTT
GCTCTTCCTGTTGGTTGTCCTTTTCTTCTGGACTGAAATGCTGTGTGTGCTCCTGCTTCC
TCTTCTCCATTCCTTCTGAACTGAAACACTGTGAACGCTCATCCTGCTCTTCACCCCTTC
CTTCAAGACAAAAAAACTCTGCTTGCTCTTGCCACTCTTCCCCACTTCCTCCAGGACCTG
CTCCACTTCATGAACCACCCCGAGCCTACCAAACCATGCCGCGAGCAACTGCGATGGCTC
TTGGCCGATTACGACGCCATTCTCTTCGAGCTCCGCCAGAAACTCCAGCGCTCCTTCCAG
CCTGTCGGCATTCTCATACGCGCCCAGAATCAAAGCGACACACCTGTCGCACGGTTCCAG
TCCCGCACTCCTCATGTTTCGGGTCAC

Homology of Contig U35_44938 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None