barSeed - Barley Seed Development Database

Probe CUST_26281_PI390587928

Source Contig U35_20988

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26281_PI390587928	Hv_44K_v2	TACCATCTACATGAGCCAGCTCTCTACTGCTTTCCCTCTAATGGAGGAAGATCATCATCA	140	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10364.1	1900	2e-24	1558 - 1617	100	60 / 60	minus	None
JLOC1	JLOC1_6782.1	1875	8e-25	284 - 343	100	60 / 60	plus
Harvest21	ABC18429	426	3e-25	122 - 181	100	60 / 60	plus
Harvest35	U35_20988	508	3e-25	141 - 200	100	60 / 60	plus

Contig Sequence (508 bp)

>U35_20988 508 Hv_44K_v2
AGATCTCTCTCGATCGGCTCTCTGCAAACTGCACATCACAGTGCTAGCTAGTTATAGCTC
CTCCCCTCCCCATCTCATCCTGGATCTCCGTTTATCTGCGCTGCCTAGCTAGCTAGATCT
TCTCTAGATCTCATCATGTCTACCATCTACATGAGCCAGCTCTCTACTGCTTTCCCTCTA
ATGGAGGAAGATCATCATCACCAGGATCACCATCAGGGACACTTCCAGGCCTTCACCCTG
CCCAAGGATCCCCCGATCTTGTTCCCTTTTGTGATCAGCAACAGCAGCCCTAGCGAGAAC
AGCAGTACTCTCAGCTACGGATCGGACCAGCACTTGATGCAGCACCATGTCATGCTAGAT
CAGCCCCAACATATGATCGGTGGATCATCGAGTGTGTTTTCGACGCCGTTCCCGACCGTC
GAGAGCATCCACGGCGACATGATCGAGCGATCCTACTCATACGATCCATATGATATGGAG
AAGCTGCAGGCCACCAGCGGATCGCTCA

Homology of Contig U35_20988 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None