barSeed - Barley Seed Development Database

Probe CUST_26280_PI390587928

Source Contig U35_20989

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26280_PI390587928	Hv_44K_v2	TGTCTCGGTGTTTGTCTGCGTATCCACTTTCAATTCAAAAGATGGAAGTAATGGTGTAAA	1312	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.429	1.629	1.586	0.801	0.217	0.294
Raw	1294.955	2268.395	1953.247	1577.544	146.203	216.356

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45371.1	2234	2e-23	2000 - 2057	100	58 / 58	plus	ABC14656
MLOC	MLOC_45371.2	1976	2e-23	1892 - 1949	100	58 / 58	plus	ABC14656
JLOC1	JLOC1_29455.1	2035	1e-23	1893 - 1950	100	58 / 58	plus
Harvest21	ABC14656	1387	3e-25	1314 - 1373	100	60 / 60	plus	ABC14656
Harvest35	U35_20989	1386	3e-25	1313 - 1372	100	60 / 60	plus

Contig Sequence (1386 bp)

>U35_20989 1386 Hv_44K_v2
GGCCACTGTAACAGTAACAGACGGCGAGATTGCGGCCAAGGATGGCTTCACCTGTGAGCT
GACTGATGTGGCCGTTGAGGTGGACGACGGCAGAGTGGTGACCGCCGACGATATGCCACA
CAGCCCAGCTATAATGTTTAAGGGTGCCGTGCAAGTGGTCACCATCGAGAACCTGTCGCA
AGCCACAGTGACTGACGATGAGGGTTCAGTCAAGGGCCTGGCAAGTGTGTCAGTTGAAGA
GGATGCAGTGGTGGCCACCATGGATGAGAAAGTGGAGGAGGTGCTCGTCGTCGACTACCT
GTCGTCGCAAGCCATGGTGACTGATGACGAATGGGCAGCCAGAGACAAGTGTGCCCAGGA
AGTGGTCACCGTCGATTACCTGTCGCAGGCCACAGTGACAGACGACGAGTGGGCAGTCAA
GGAGGGCACTTCCGCTGGCGACCACTCGCCGGTGTTTGACGCCGCCGGAGACAGCAGCGG
CCACGTCATTTCGCCTCTGTTTGCAGGCCTGTTCGAGGATGCCACAAAGTTCCTGTCCAT
GGACTCGACCACCCTGGAGGCAACAACGGTGCCTGAAGCTGCTTCTGAGAAAAAGGCTAC
TGTACCTGCTGTTGCAATGGGAAAAGAGAAGGAAGTGAAGGACCAAGGCAACGAGTCTGA
AGCGCTGGGCAGCCTGAGCCTAAGGAAGCTTAGGATCCAGCTCAAGGAGAAGGCACAGGA
CCTGGAGAAGCCAGTGGAACGATTTTCCATTCACCCAATTTTTGAAGTGAGGGAAGGGAA
GAAGCCATTGGACACGCTGAGCCTGAGGAGGCTCAGGCTGAAGCTCAAGGAGAAGCTGAA
CGCTCAGAAGAACAGAGAGCAAACTAGGATGCCCCTGGGCAGGCTGGACGAGAACTCGGC
GTGCAAGTCGCAGAAGAGGGAGCACAATAGGGTGCCCCTCGGCAGGCTGGACGACAACTC
TGCGTCGAAAACGCAGAACAGAGAGCGGAGCAGGGTACGCCTTGGCAGGCTCGACGAGAA
CGCGTGCTGATGATTACACGGCATCAGATTTTTTATCTGACTTGGATGCTCACTACTGAA
GATTTGGTTGTGAAACCATGGTTTCTCCAACCCAACCAGCCCCTGATCTAACTTATCTGT
GTGGGTTCTTGTGCTGTTACTTTGCACGTTCGCCGGCAGAGCGTGAGAGGATTTGGCTGT
ATTTTTTAGTCGTGTTCTCAACTTGTATCAGAGTGATGATTGTTTAGCTTTAATAACTTC
TAGGTGGTGTGCCTCGTGTCACTTACAATAACAGAGTGTTTGTTGCTTATCTTGTCTCGG
TGTTTGTCTGCGTATCCACTTTCAATTCAAAAGATGGAAGTAATGGTGTAAAAAAAAAAA
AAAAAA

Homology of Contig U35_20989 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None