barSeed - Barley Seed Development Database

Probe CUST_26276_PI390587928

Source Contig U35_18670

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26276_PI390587928	Hv_44K_v2	CATTGAGGCTTTCAGTTCCCGCACTTTTCAGCATATCATTACATCAGTTGCATATTGAAA	1058	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.293	1.925	1.095	0.714	0.274	0.230
Raw	867.822	1138.791	569.620	583.319	79.352	72.987

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_38996.1	1374	4e-23	1106 - 1162	100	57 / 57	plus
Harvest21	ABC10222	1134	2e-22	1059 - 1120	97	60 / 62	plus	ABC10222
Harvest35	U35_18670	1132	3e-25	1059 - 1118	100	60 / 60	plus

Contig Sequence (1132 bp)

>U35_18670 1132 Hv_44K_v2
ATGAGTAAACGCGTCCGCTTCCTCTTCTCCATCGCCGCAGCCATCGCCGCGGCATCCCTC
CTCGCCGCCTCGCTCCGCCGCCGCGCGCAGCCGCCCCGGCTCCCCGACCAGCTCCTCCCC
GGCCCCATGGCGGCCCGCAACCGGAGCTTCGTGCTGTGGCTGCACGGCCTCGGCGACTCC
GGCCCCGCCAACGAGCCCATCCGCACCTTCTTCGCCGCGCCGGAGTTCCGCCACACCAAG
TGGGCGTTCCCCTCCGCCCCCAACTCCCCCGTCTCCTGCAACAACGGCGCCGTGATGCCG
TCATGGTTCGATATCCACGAGCTGCCCTTGAGCCCTGGTTCGCCGCAAGATGAGAGCGGT
GTTATTAAGGCCGTGGAGAATGTGCACGCCATGATCGACAGGGAGGTGGCCGCTGGCATC
CATCCTGACAACATATTTGTGTGTGGGTTCAGTCAGGGAGGTGCTCTGACATTAGCAAGT
GTTTTGCTTTATCCAAAGACGCTAGGTGGCGGTGCCGTGTTCAGTGGCTGGGTCCCTTTC
GGTTCGTCGGTCATTGAGAGGATTTCACCCGAAGCAAGGAAGACACCTATTTTGTGGTCG
CATGGTATCGCTGATCAAGTGGTATTATTTGAAGCCGGTCAGGCCGGCCCACCATTTTTG
CAAAGTGCAGGCATCAGTTGTGAATTTAAGGCATATCCAGATCTAGGCCACTCGATCGCG
AAAGAAGAGCTATCCTCTCTCGAGGCGTGGATCAAGGGCCGTCTCAAAGCCTCGCAAGAT
AAGCAAAGTTAACGTCCTTCAGTTTGGGCCGCCACCACGCCCCCCATTATAGCAAAACCT
GCTAATGCAGCCGTGCTCAACCTGTATTCCCTAGTATATTGATGAACTCGGACGGTCCAA
GCTATTCTTGAGACTTTGTCATGCTCATGAATGTTATGTTCCAGGAAATTATGTACCGCG
GTATGTTGTTTTTCTTCTCCTGTAGGTTTGAGCTGGTACTACCTGGATACCGATGTGCAT
GTATCCTCTCTTCCTAGATTCCACCCATCGATACCGTCCATTGAGGCTTTCAGTTCCCGC
ACTTTTCAGCATATCATTACATCAGTTGCATATTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_18670 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g57370.1	267	7e-146	protein\|acyl-protein thioesterase, putative, expressed
Brachypodium v1_2	Bradi5g25590.1	264	2e-161
Arabidopsis v10	AT4G22300.1	262	2e-114	\| Symbols: SOBER1 \| carboxylesterases \| chr4:11787560-11789252 REVERSE LENGTH=262