barSeed - Barley Seed Development Database

Probe CUST_26266_PI390587928

Source Contig U35_44940

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26266_PI390587928	Hv_44K_v2	ACTGAGATCTGATTTTTGGGGAACAAACTTCAAAGTATATGATAGCAAGCCACCACATGA	355	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.305	0.480	1.289	1.840	1.086	1.487
Raw	13.535	33.874	77.470	179.164	36.682	54.932

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64975.1	2708	2e-24	723 - 782	100	60 / 60	plus	ABC16046 ABC20499 ABC39626
MLOC	MLOC_64975.2	2780	2e-24	672 - 731	100	60 / 60	plus	ABC16046 ABC20499 ABC39626
MLOC	MLOC_64975.3	6584	3e-22	4853 - 4908	100	56 / 56	plus	ABC16046 ABC20499 ABC39626
JLOC1	JLOC1_42712.1	2672	8e-25	727 - 786	100	60 / 60	plus
JLOC1	JLOC1_42713.1	2104	1e-22	1788 - 1843	100	56 / 56	minus
Harvest21	ABC43220	418	3e-25	356 - 415	100	60 / 60	plus
Harvest35	U35_44940	418	3e-25	356 - 415	100	60 / 60	plus

Contig Sequence (418 bp)

>U35_44940 418 Hv_44K_v2
CGTCCGGCGGCGAGAGGTGGCCGGCTCGCAAGGATGTCGTCTCCTGCGCCTGCGTCTGCC
GCCGGTGGCGCGAAGCCGCCGTCGCCGTCGTGCGGCCGCCCGCGGTGTCCGGAAAGATCA
CCTTCCCGTCCTCGCTCAAGCAGCCAGGGCCAAAGGAGTTTCCAATGCAGTGTTTTATCA
AGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGCTTGACAACTGCTACTGTAG
ATAAAGGGAAGTTTCTCATGGCCGCAAGAAGGTTTAGGCGTGGTCCTCATACTGAGTACA
TTATATCCCTTGATGCTGACGACTTGTCACAAGGGAGCAATGCATATATGGGGAAACTGA
GATCTGATTTTTGGGGAACAAACTTCAAAGTATATGATAGCAAGCCACCACATGATGG

Homology of Contig U35_44940 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g48370.1	357	2e-75	protein\|OsFBT1 - F-box and tubby domain containing protein, expressed
Brachypodium v1_2	Bradi2g46350.1	361	1e-75
Arabidopsis v10	AT1G53320.1	379	3e-54	\| Symbols: AtTLP7, TLP7 \| tubby like protein 7 \| chr1:19891237-19893429 REVERSE LENGTH=379