barSeed - Barley Seed Development Database

Probe CUST_26265_PI390587928

Source Contig U35_18678

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26265_PI390587928	Hv_44K_v2	CGTGTAATAACAATTCTCCTAAAGAAGGCTTGCCTTCTCTATTCAATTAATTCGTTCTCT	1038	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.269	1.749	1.471	0.856	0.333	0.453
Raw	863.003	1794.761	1327.953	1227.522	164.199	246.573

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248406.1	4436	2e-24	4373 - 4432	100	60 / 60	plus	ABC01563 ABC10797
MLOC	AK249870.1	1192	2e-24	1131 - 1190	100	60 / 60	plus	ABC10797
MLOC	MLOC_4112.1	1661	2e-23	1 - 58	100	58 / 58	minus	ABC10797
JLOC1	JLOC1_2508.1	1759	8e-25	1682 - 1741	100	60 / 60	plus
Harvest21	ABC10797	1119	3e-25	1039 - 1098	100	60 / 60	plus	ABC10797
Harvest35	U35_18678	1119	3e-25	1039 - 1098	100	60 / 60	plus

Contig Sequence (1119 bp)

>U35_18678 1119 Hv_44K_v2
GCCCGGCCCAGATTGGCCGCTCCTCCTCCTCCTGCTCCTCCTCCGGCTGCATCTGTTATC
AGAAATTTATCACTATTGTGGAAGGACATCTGCTCACAGAGTTGCTTCAGAAGCCAGAAC
AAAGCTATTTGCTGTCTTGCTTGCATGGCAACCAACGAAAACCTCCCACCAAATGTCATT
AGGCAATTGGCTAAAGAATTGAAGAATCTTGACCAGTCACCTCCAGAAGGGATAAGAGTG
ATTGTGAATGACGATGACTTCACAAGTATTTGTGCAGATATAGATGGCCCTGGTGGGACT
CCGTACGAGAATGGGGTTTTCCGGATGAAGCTAGTCTTGTCCCGTGACTTCCCTCAATCC
CCACCGAAAGGATTTTTTGTGACTAAAATATTCCATCCAAACATATCAAGCAATGGTGAG
ATCTGTGTTAACACGTTGAAAAAGGATTGGAATCCTACTCATGGATTAAGGCATGTTCTA
CTGGTGGTGAGATGCCTGCTGATTGAACCATTCCCAGAATCTGCGCTCAATGAGCAGGCT
GGAAAGATGTTACTTGAGAACTATGCGGACTATGCACGGCATGCAAGGTTATACACGAGC
ATTCATGCCCTCAAACCTAAGAGTAAGCCCAAGAGTGGCACTATCTCTGAGTCAACTTCT
GTAAACGTGGATCAGTCAAGCACAAATCTATGTGAAACTGCACCATCAACGCCCGTGGCT
TTATGTGCTACTGCTGCTACCAAAGTGCCGGGCTCAAACTCGCTGGATCAGAATGCTCCC
GCTGAGCCCACTGTTGGATCATCTACGGCATTGCCCAAGAAGGAAGGACCTGTTGCTAAG
AAGAAGATGGACGCGAGGAAGAAGAGCTTGAAGAGATTGTAAGCAAAATGTTGGGGGATA
GGAGGTGCCAGATGTAGCAGACGAGTGAATATTGGGCATTTGGGCTCCAGGTGACATGAG
AGGCATCTGGTAAATTGTTTTGTCACCTGCAGAAATTATGTCAAAAGAATGTGAATTGTA
TATCTTGCATCAACACTTCGTGTAATAACAATTCTCCTAAAGAAGGCTTGCCTTCTCTAT
TCAATTAATTCGTTCTCTTTAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_18678 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g45000.2	253	6e-114	protein\|ubiquitin-conjugating enzyme, putative, expressed
Brachypodium v1_2	Bradi3g05680.1	250	3e-128
Arabidopsis v10	AT5G05080.1	251	8e-92	\| Symbols: UBC22, ATUBC22 \| ubiquitin-conjugating enzyme 22 \| chr5:1498727-1499972 REVERSE LENGTH=251