barSeed - Barley Seed Development Database

Probe CUST_2625_PI390587928

Source Contig U35_39067

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2625_PI390587928	Hv_44K_v2	TCGTCTTCTCCAAAGAGGGCAAGGGGTCGTTCCGTGCGGTCTGTGTCCACCACCTCAGGT	527	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51140.3	1894	2e-24	569 - 628	100	60 / 60	plus	None
MLOC	MLOC_51140.2	2001	2e-24	683 - 742	100	60 / 60	plus	None
MLOC	MLOC_51141.1	4049	2e-24	704 - 763	100	60 / 60	plus	ABC18762
MLOC	MLOC_51141.2	4450	2e-24	683 - 742	100	60 / 60	plus	ABC18762
MLOC	MLOC_51140.1	1759	2e-24	745 - 804	100	60 / 60	plus	None
JLOC1	JLOC1_32642.3	2000	8e-25	637 - 696	100	60 / 60	plus
JLOC1	JLOC1_32643.1	4516	8e-25	3798 - 3857	100	60 / 60	minus
JLOC1	JLOC1_32642.2	3830	8e-25	660 - 719	100	60 / 60	plus
JLOC1	JLOC1_32642.1	4434	8e-25	660 - 719	100	60 / 60	plus
Harvest35	U35_39067	633	3e-25	528 - 587	100	60 / 60	plus

Contig Sequence (633 bp)

>U35_39067 633 Hv_44K_v2
GGCAGCCATGGCCTCCCAACTAGGGCCGCCGACGGCGAGATATACCCCACCGGCTCCCAG
CACCATCACTTCTATAGGAAACGACCTTCTCCTCGAGATCTTCCTCCGTCTCCCCTCCCT
CCCGAGCCTCGTCCGCGCCGCCCTCGCCTGCCTCACCTTTCTCCACGCCGTCCGTTCGTC
CCCCGTCTTCCGCCGCCGATTCCGGTCGCTCCACCCATCCCCATTCCTTGGCCTTTTTAT
CGAGTCCTACAGCTGTTCCATCCCTTCTTTCGTCCCCCTCCGCCGCCGGTCCGACTCAGA
CCTCGCCGCCGCGATACGCGGCGCTGATCTCTTCCTCACCCGACTCCCGGAAGACAACGA
CGACCCCTCTCCCGGGTGGGAGATCCAGGGCTGCCAAGAGGGCTACGTCGTCCTGCTCCA
CCGGAGCACCTGGCAGGTTGCCGCCTACAACCCCCTCACACTGGTTCTGGATTTCTTGCC
TNCACTGCCCCATGAGATGTCCCGCTCCCGCTCCCTCGAGATCCACGTCGTCTTCTCCAA
AGAGGGCAAGGGGTCGTTCCGTGCGGTCTGTGTCCACCACCTCAGGTCCCCGCGGCGGGC
GCGGGTGCGCATCGCCGTCTTCTCATCGGACGA

Homology of Contig U35_39067 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g36935.1	216	1e-64
Arabidopsis v10	None