barSeed - Barley Seed Development Database

Probe CUST_26246_PI390587928

Source Contig U35_32973

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26246_PI390587928	Hv_44K_v2	ATCTGGTGGTTTTCTAGAGTCTGACAGAATCAACTAAATGTTGTCAGTATGGAGTCTCCA	43	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72839.1	3056	3e-22	917 - 975	98	58 / 59	plus	ABC06595
MLOC	MLOC_72838.1	1360	3e-22	1268 - 1326	98	58 / 59	plus	ABC06595
JLOC1	JLOC1_48474.1	2087	1e-22	1462 - 1520	98	58 / 59	minus
JLOC1	JLOC1_48473.1	2143	1e-22	1308 - 1366	98	58 / 59	plus
Harvest21	ABC06595	959	1e-24	125 - 183	100	59 / 59	minus	ABC06595
Harvest35	U35_32973	723	3e-25	44 - 103	100	60 / 60	minus
Harvest35	U35_2475	1470	1e-24	1287 - 1345	100	59 / 59	plus

Contig Sequence (723 bp)

>U35_32973 723 Hv_44K_v2
TACACAAAATGTCACTTATAGTTACCAAAGAGCAGAAAGCGTATGGAGACTCCATACTGA
CAACATTTAGTTGATTCTGTCAGACTCTAGAAAACCACCAGATAATTGTGTATCAAAGGG
GGAGAAGAATGCTTGTAGCGTGGTTTTCAACCTTGCACATATGAATAATGACACCTATTA
CACATGTACAGTTAATCTAGTAAAGGGCTCCCCTCTTTGGCAAGAATAAACACGCCACCC
CCATCACCTTTTGATATCCTCAAGTCTTTGTCGAGGTAGGTTGTCAAAAGCCACGACTTG
GCCTTGTTGTCGCCGGGAATCGGTACCTTTAAAGGTGGCTGCCCAGAGATGGACCCTGCA
ATGCTAGCAAATGCTCGCTGCAAAGGCTCAGCGGCCGCTGGAGATTGTAACCTCTAATCC
TGTTTGGTTCTCTTTGTGGATTGGATATCCTTCATGTGAACTTTACAGAACAGAAGCAGT
GGGCATGCACGAATTAATTTAGTGCTTAAGATGTGGCACGAGAGCACAGTAGCACACAAG
CCTTCCCCATATGTGTAAGTAATATTTACATACTTCCTGTTGTGCTCCATAGCCATGACT
TCTATGGGATGTCAGTGTTGAATAACCTGGGCCTGTTAGATCACCCAGCTAAATCAGTCT
TAGATATTGTGCTTAATCATGCATATGTGATGTACTTCTGATTCTTTTAGTTACGGATTA
CTT

Homology of Contig U35_32973 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None