barSeed - Barley Seed Development Database

Probe CUST_26244_PI390587928

Source Contig U35_18681

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26244_PI390587928	Hv_44K_v2	ACTGTATTTAAGAGTGCATTTTTGAATAGTCCATCTGTTTCCCACCTTCGCCTTAAAAAA	617	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20543.1	843	7e-23	449 - 505	100	57 / 57	minus	ABC11309
JLOC1	JLOC1_14241.1	516	4e-23	91 - 147	100	57 / 57	minus
Harvest21	ABC11309	675	3e-25	605 - 664	100	60 / 60	plus	ABC11309
Harvest35	U35_18681	688	3e-25	618 - 677	100	60 / 60	plus

Contig Sequence (688 bp)

>U35_18681 688 Hv_44K_v2
CACGCGTCCGATAATAACCAAGGTGGTTATGGTGGATATAGCAACCAGGGAGGATACGGC
CACAACCAAGGTGGTTATGGCAACCAGGGAGGTTACGGCCACAACCAAGGTGGTTATGGC
AACCAGGGAGGTTACGGCAACCAGGGAGGGTACGGTCAAAACCAAGGTGGCTATGGAGGG
GGTTATGGTTATGACCAAGGTGGATATGGGGGATATGATAATGGTGGCTGGAACTACAAC
CAGAACAGAGGCCGGGGTGGCGGTGGGCGAGGAAGAGGCAACTGGGGATACAGTGGTCCA
GGATACGAGCGCGGTGGACGAGGTGCAGGTGGCCCAGGTGGCCCAGGCGGCAGGGGCTAC
GTGCGGGGCCGTGGTCGGATGGGTCCTGGCCGCGGGCGGGGCAACCAGAACTATTAGGTC
ACATAGTGCTGTATTATTGCAAAAAAGAGAGAGAAGGGACGTGTTCTGTGAATCGGAACC
GAACCTTGGCGCTGTTTGGTTGTGAACCATCGACTAGGCTTCCCAGTTTTTAGCTATAAT
CGCCAATGGTACCTGTACCATTGCTTCCATTCTGTGGGATTTTGACAAGCATGTTATGTT
ATTCCTGGGACACTTTTACTGTATTTAAGAGTGCATTTTTGAATAGTCCATCTGTTTCCC
ACCTTCGCCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18681 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None