barSeed - Barley Seed Development Database

Probe CUST_26242_PI390587928

Source Contig U35_18682

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26242_PI390587928	Hv_44K_v2	GACTAGGCTTCCCAGTTTTTAGCTATAATCGCCAATGGTACCTGTACCATTGCTTCCATT	498	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20543.1	843	2e-24	552 - 611	100	60 / 60	minus	ABC11309
JLOC1	JLOC1_14241.1	516	8e-25	194 - 253	100	60 / 60	minus
Harvest21	ABC37446	431	3e-25	91 - 150	100	60 / 60	minus
Harvest21	ABC11309	675	3e-25	499 - 558	100	60 / 60	plus	ABC11309
Harvest35	U35_18682	558	3e-25	499 - 558	100	60 / 60	plus
Harvest35	U35_18681	688	3e-25	512 - 571	100	60 / 60	plus

Contig Sequence (558 bp)

>U35_18682 558 Hv_44K_v2
GTTATGGTGGGTATGATAATAACCAAGGTGGTTATGGTGGATATAGCAACCAGGGAGGAT
ACGGCCACAACCAAGGTGGTTATGGCAACCAGGGAGGTTACGGCCACAACCAAGGTGGTT
ATGGCAACCAGGGAGGTTACGGTCAAAACCAAGGTGGCTATGGAGGGGGTTATGGTTATG
ACCAAGGTGGATATGGGGGATATGATAATGGTGGCTGGAACTACAACCAGAACAGAGGCC
GGGGTGGCGGTGGGCGAGGAAGAGGCAACTGGGGATACAGTGGTCCAGGATACGAGCGCG
GTGGACGAGGTGCAGGTGGCCCAGGTGGCCCAGGCGGCAGGGGCTACGTGCGGGGCCGTG
GTCGGATGGGTCCTGGCCGCGGGCGGNGCAACCAGAACTATTAGGTCACATAGTGCTGTA
TTATTGCAAAAAAGAGAGAGAAGGGACGTGTTCTGTGAATCGGAACCGAACCTTGGCGCT
GTTTGGTTGTGAACCATCGACTAGGCTTCCCAGTTTTTAGCTATAATCGCCAATGGTACC
TGTACCATTGCTTCCATT

Homology of Contig U35_18682 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None