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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_26237_PI390587928Hv_44K_v2TTGCGTACTTGTTAACTGCTTTGCCTCATCCAGTTTAGTATTATCTCGTTTTGCAGTTAA2101GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.3101.4861.0570.6760.2880.233
Raw 3998.5707019.8004401.6504315.300672.488589.424



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK248499.121782e-232121 - 217810058 / 58plus ABC10446
MLOCMLOC_10934.123029e-221 - 5510055 / 55minus ABC10446
JLOC1JLOC1_7197.324463e-242279 - 233710059 / 59plus
JLOC1JLOC1_7197.233773e-243210 - 326810059 / 59plus
JLOC1JLOC1_7197.119983e-241831 - 188910059 / 59plus
Harvest21ABC1044610753e-251001 - 106010060 / 60plusABC10446
Harvest35U35_1868521763e-252102 - 216110060 / 60plus



Contig Sequence (2176 bp)

>U35_18685 2176 Hv_44K_v2
GAGAGTCTCTCCCTGTCCGCCGCACGCAAAAGCCAAATCCCCCATCTTTAACCCCGGTCC
ATCCCATTTCCACGAGAAATCCATCGGAATCGCACCAGAAACCGCGAAGAACAGCGAGCG
CGAGGCCCGGAACGAATCCCCCCCTGTCGTCGTCTTCGCAAAGCCCGTCCCTTTCTTTCT
TTCTTGTTCCGCCCGAACCCCTCCCCTCGTTCCCATCGATCTTGCTTGGCGGCGGCGGCG
GAGGGAGGACGGCGGAAGGCTGCTCGGCTCGGCCATGGCATTGCCCGTGCGCCTCGTGCG
CGTCTCGCTGCTGCTCCTCGTCACGCTCTCCTTCTGCGCCGCCGGGTCGCACCGCGAGCC
CCACTGGGCGCTCCACTCCGGTCAAGATAAGCGTGGCTTGTCCCATGGCTTGGTGGTGAG
AAGATCAGTTGCTGAAGCTCCTGCTGACATAAATGTCACTACCAATAGCTCCTTCGTATT
GGCGGAACACCGAACTTTTCGGAAGGACCCTCTGAATGCATTCAACAGATATGCGGGCGG
TTGGAACATCAGCGAAGTGCACTATTGGGCTTCCGTTGCATACACAGCGTATCCGTTGTT
TGTCGTTGCCTTGCTGTGGTTTGTGCTATTCTTCCTTCTTATGATTGGCATTTGCTGCCA
CCATTGCTGCTGTGGGCACAAGAGCTATAGCTACTCGAGAGTAGCATATGCCCTTTCGCT
GATACTTCTGATATTATTCACATGTGCCGCAATTGCTGGAAGTGTTGTGCTGTATGTCGG
CCAGGGCAAATTCCATGCAAGCACTACGACCACCTTGGATTTTGTCGTCGACCAGGCGGA
TTTTACTGTTGAAAACCTTAGGAACCTCTCGGATAGTTTATCCGCTGCAAAAAAGGTTGA
CATCGGACAGTTCTTACTTCCTCCAAATGTGTTGGGTGAGATCAACGAGATTCAGGTGAA
ATTGAACACATCAGCTACCGATCTCGCTACTAGAACATCTAAAAATTCTGCGAAGATCCA
AAAATTGCTGAATCGTGTGCGGCTAGCTTTGATCATCATTGCAGCAGTAATGCTTCTTCT
GGCATTTATTGGCTTCCTGTTGTCCATCTTCGGGCTGGAGTTCCTTGTCAACATTTTGGT
CGTTGTTGGATGGATACTAGTCACCGGGACCTTTATCCTGTGCGGTGTATTCCTTCTTCT
GCACAACGTAGTTGGTGACACTTGTGTTTCAATGGACGAGTGGGTTGCTCATCCAACAGA
ACACACTGCTCTGGATGACATTATCCCTTGTGTTGAACCGGCTACGGCGAACGAGTCTCT
GACAAGAACCAAGGAAGTCACATCACAGCTGGTGAATCTGGTGAACCAGGTGCTCTCCAA
CGTGTCAAACCTAAACTTCCCTCCAGCGGCGGCCCCCTTCTACTACAACCAGTCAGGGCC
ACTGATACCCACACTCTGCAACCCGTTCGGACCCAATCTGAGCAACCGCACCTGCGCCCG
CGGAGAGGTCACCTTGGAGAATGCAACCCAGGTCTTCAGGAGCTTTGAGTGCCAGACCAA
GACGGTGTCGGGAACGGAGGTGTGCACGACGGTGGGCCGGCTGACCCCTCGGATCTTCGG
GCAGATGGCGGCGGGCGTGAACGTGAGCCTGGGGCTGTACCAGTACGGGCCGTTCCTGGT
GCAGCTGCAGGACTGCACCTTCGTGCGCGACACCTTCAGCAACATCAGCCAGAACTACTG
CCCAGGGCTGGAGCGGTACAGCAAGTGGGTGTACATCGGGCTGGTGCTGGTGTCGACGGC
GGTGATGCTGTCCCTCATCTTCTGGGTGATCTACGCCAGGGAGCGGCGTCACCGGGCGTA
CAACAAGGCGCACCGGGGTGACAAGCCGGCGCCGATGGGCGGGAATGCCTGATTAGCGAT
GGCTGTTTCGTTCGATCGCCATGGACCGCGTCAGTGAGTGTAGAGATTAGAGGACCGCTG
TGTGGTTGACTTGATTGCTGCCTGTTGATTGATTCTTTTTTCGTTTTTGTGAATCTGATG
CTTGCGTATTTGGTTCTGTTCCCGCTCGGTTGATGTACAGTTTGTGATGTAGGATGATGG
ATTGCGTACTTGTTAACTGCTTTGCCTCATCCAGTTTAGTATTATCTCGTTTTGCAGTTA
AAAAAAAAAAAAAAAA



Homology of Contig U35_18685 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g55590.15470.0protein|expressed protein
Brachypodium v1_2Bradi3g54320.15550.0
Arabidopsis v10AT2G12400.15415e-174unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr2:5005144-5008140 REVERSE LENGTH=541