barSeed - Barley Seed Development Database

Probe CUST_26227_PI390587928

Source Contig U35_39112

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26227_PI390587928	Hv_44K_v2	CTGTTGTTATGCAGGGAACTGGTTCAAGTTCTGAAATGCGTTCCCAAGAAATAGCATCCC	529	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.779	0.949	1.662	1.259	1.031	0.755
Raw	108.575	205.751	317.533	358.537	107.927	88.123

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368569	2885	2e-24	2073 - 2132	100	60 / 60	plus	None
MLOC	MLOC_11310.1	4173	2e-24	2212 - 2271	100	60 / 60	plus	None
MLOC	MLOC_11310.2	4134	2e-24	2173 - 2232	100	60 / 60	plus	None
MLOC	MLOC_11310.4	4270	2e-24	2168 - 2227	100	60 / 60	plus	None
MLOC	MLOC_11310.5	3535	2e-24	2077 - 2136	100	60 / 60	plus	None
MLOC	MLOC_11310.6	4184	2e-24	2077 - 2136	100	60 / 60	plus	None
MLOC	MLOC_11310.7	4113	2e-24	2031 - 2090	100	60 / 60	plus	None
MLOC	MLOC_11310.3	4157	2e-24	2130 - 2189	100	60 / 60	plus	None
JLOC1	JLOC1_7484.2	4304	8e-25	2141 - 2200	100	60 / 60	plus
JLOC1	JLOC1_7484.1	4343	8e-25	2180 - 2239	100	60 / 60	plus
Harvest35	U35_39112	622	3e-25	530 - 589	100	60 / 60	plus

Contig Sequence (622 bp)

>U35_39112 622 Hv_44K_v2
GTTAACACGGGGATTGCGCATGGCAGTCCAATGCAAGAAAGGCAAAATATTACCAGAGCA
CCACAGAGGGCCGAATCATCTTTGCAAGAAGCCAGACTGTCTTCGCTCCCGAATAGAAAT
GTTGGGCCGTATCAAACATCTCACATCTCTCCAAACACACCATTCAAAGAACAACAGTTA
AAGCAGCTCCGAGCACAGTGCTTAGTGTTTCTTGCATTCAGAAATAACATGCAGCCCAGA
AAGGTGCACCTTGAAATTGCCTTAGGTGGAGGCCCCACTGCAGAGGGTGGCAGCGTAGGT
CAGGGAGGTAACGAGAGCAGAATGGCTGATGGTTCTGCAAGGGAAAACGGAAACAGTCAG
GAAAACTCTGCTATTTTCGGCAGCCAAAGTGATATGTCTAGACTCCCATCCACATCCGCA
GGCAGCATTGCAGAGGCTGATTCTTCACTGAAGGACTCGGAAATTAAGAAGAAGATCAAT
ATCGCTGAACATGAGAAGTCATCGATGGAAATAGAAAATATCCAGCAAGCTGTTGTTATG
CAGGGAACTGGTTCAAGTTCTGAAATGCGTTCCCAAGAAATAGCATCCCCTGCGCCATCC
GGACCACAGCAGTCATACTTTC

Homology of Contig U35_39112 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None