barSeed - Barley Seed Development Database

Probe CUST_26226_PI390587928

Source Contig U35_39114

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26226_PI390587928	Hv_44K_v2	CATATTGCAGCAGCTGTCTTTTGTATTCCTGAACTCTTAAGTAGCACTTTCACATTGGTG	491	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62946.1	1302	2e-24	499 - 558	100	60 / 60	plus	None
MLOC	MLOC_62946.2	1557	2e-24	498 - 557	100	60 / 60	plus	None
JLOC1	JLOC1_41221.1	1400	8e-25	412 - 471	100	60 / 60	plus
Harvest35	U35_39114	739	3e-25	492 - 551	100	60 / 60	plus

Contig Sequence (739 bp)

>U35_39114 739 Hv_44K_v2
TCTGCTTCTAGGTATGTAATGTCAAGAACATTAATTATCAAAGTAGAATGAGATGACTGG
AAGGGTTAGGCCATTTTCTAATGGGAATCTACATTGGTTGGTATGTTATCCAGACTAGAA
TGGGGCCTATGTAGTTTGTGACCAGCTAATTCCTACCTGTTCTGGTTTGCTATTTTTTTT
ATATGTGTACTTCTCCAAAGTATTGTGTTCCAGTGCTGTTCTGTGCACATCATATAACGG
TTACATTTAATTAATTGAAAGTACACCTTTTCCTGAAGTGATATTTTTGTACTGGTAACT
GTCATTATTTTCTGGGTGTGGATAATTCTCATTTTATAACACTGTAATCAGTTTTGTGGC
TTATTTAACTTGTGTACTTTTGATCAATCCAGTTTTTCTAAAGTATCAAATATTCAGATG
ATAGCTATAGATTTGAATTTGCTTTTGACTATATATAAAATTTCTGCAGCATACTTTTCC
CCCTTTCAGTCCATATTGCAGCAGCTGTCTTTTGTATTCCTGAACTCTTAAGTAGCACTT
TCACATTGGTGTGTNTTTCACCGGAAGAGAGCCAGAAGAATCGTCGACACATGGGAGAAA
CAGTTTAATAATGCAACAAAGGATAAGAAAGTGTCATTCCTGTATCTATCANATGACATC
CTGCAAAATAGNCAACGCAAGGGTGGAGAATTTGTGAATGAGTTCTGGAAGGGTCTTCCT
GGATCACTTAAAGATGTTC

Homology of Contig U35_39114 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None