barSeed - Barley Seed Development Database

Probe CUST_26221_PI390587928

Source Contig U35_15160

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26221_PI390587928	Hv_44K_v2	GCAGAAAAATATGTGATGTTATGAGAGATGGTTGTACGTTCCTCAAGTATTACAATGAAC	1345	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.320	4.816	1.344	0.679	0.328	0.406
Raw	95.229	175.131	39.743	33.368	4.233	6.097

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_44479.1	1704	8e-25	1445 - 1504	100	60 / 60	plus
Harvest21	ABC05658	1498	3e-25	1346 - 1405	100	60 / 60	plus	ABC05658
Harvest35	U35_15160	1502	3e-25	1346 - 1405	100	60 / 60	plus
Harvest35	U35_39345	596	4e-24	36 - 93	100	58 / 58	minus

Contig Sequence (1502 bp)

>U35_15160 1502 Hv_44K_v2
CACTCCCAGCTGATAAACTAAAGCTAAGCAATCACCAGAACGCACGCACGCACGCACGCG
AAGAACACAGAAACCAGAGGAGCATAAGAAAGATTACCAAGATGCAAGCATTCCTCGCCT
ACTCGATCCTTCCGAATCCATGCTCCAGGTCATGCTTCCCGCGCCCAGCGACGCGACCCC
AGCTCCTCCTGTCCTCGGTTCCGGCAGCGAGGACGAGTGATGCCGCCACCGCAAGAAGAT
GCGGTGGGCCGGGCCGGAGCGTGGTGACCGCGGCGTCATCGTCCCCGGCGGTGGCCGTCA
CGGCGACGGACGTTCCCGGGACGATGAAGGCTTGGGCGTACGAGGAGTATGGGGACGCCA
GCGTGCTCAAGCTCGACGAGGCCGTGTCGGTGCCGGCGGTGGGCGAGGACCAGGTGCTGG
TGAAGGTGGCGGCCGCGGCGCTCAACCCCGTTGATTCCAAGCGGCGCATGGGCAAGTTCA
AGGCCACCGACTCCCCACTCCCGACTGTGCCAGGGTACGACATGGCCGGAGTCGTCGTCA
AGGTCGGCAGCCAGGTAAAGAACCTCAAGGAGGGCGACGAGGTGTACGGCCACATCAGCG
AGAAGGTCCTCGAGGGTCCCAAACAGTTCGGCTCGCTGGCGGAGTACACCGCCGTGGAGG
AGAAGCTGGTGGCCCTCAAGCCAAAGAGCATCGACTTCGCGCAGGCCGCCGGTCTGCCGC
TCGCCATCGAGACCGCCCACGAGGGCCTCGAGAGGGCGGGCTTCTCCGCCGGCAAGTCCA
TCCTTGTCCTCGGCGGCGCCGGTGGAGTCGGGTCCCTTGTCATCCAGCTGGCGAAGCAAG
TTTACGGCGCATCGAAGGTGGCGGCCACAGCCAGCACCCCGAAGCTGGAGCTCCTGAAAA
GCCTGGGAGCCGACGTGGCCATCGACTACACCAAGGACAGCTTCGACGACATGCCGGACA
AGTACGACGTCGTGTTCGACGCAGTCGGCCAGGGCGAGAAGGCGGTCAAGGTGGTGAAGG
AAGGCGGCAGCGTGGTGGTCCTCACCGGCGCGGTCACGCCGCCGGGGTTCCGGTTCGTGG
TCACCTCCGACGGGTCCGTCCTGGCGAAGCTCAACCCTTACCTCGAGTCCGGGAAGGTGA
AGCCGGTGGTCGACCCCAAGGGGCCTTTCCCCTTCTCCCAGGTCGTGGAGGCGTTTTCCT
ACCTCGAGACAGGAAGAGCCGCCGGCAAAGTGGTCATTTCGCCTGTTCCATGAGACACCG
CTGTAAATAGCTAGCAGCCAAGCACAAGTGGTGTGTTTTTGCCACGGATTACTGAGCAAA
ATATTTGTTGGATCGTGCATACAAAGCAGAAAAATATGTGATGTTATGAGAGATGGTTGT
ACGTTCCTCAAGTATTACAATGAACATAGATCTTGTTTTGTTCAAAAAAAAAAAAAAAAA
CCTTGTACGGTTGTACCTAGTCATTCAGTTATTGTTTCTGATAGTAAAAAAAAAAAAAAA
AA

Homology of Contig U35_15160 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g29170.1	391	3e-164	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g34980.1	385	0.0
Arabidopsis v10	AT1G23740.1	386	5e-150	Oxidoreductase, zinc-binding dehydrogenase family protein \| chr1:8398245-8399656 REVERSE LENGTH=386