barSeed - Barley Seed Development Database

Probe CUST_26216_PI390587928

Source Contig U35_15165

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26216_PI390587928	Hv_44K_v2	CTGCTTGTGCCATCTGGTCTTGTATGGTGTACGCTCAATTTAATCCGTTGCTTATTTTTT	1436	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21356.1	1641	2e-24	1358 - 1417	100	60 / 60	plus	ABC02785
JLOC1	JLOC1_14822.1	1285	8e-25	1113 - 1172	100	60 / 60	plus
Harvest21	ABC02785	1567	3e-25	1435 - 1494	100	60 / 60	plus	ABC02785
Harvest35	U35_15165	1579	3e-25	1437 - 1496	100	60 / 60	plus

Contig Sequence (1579 bp)

>U35_15165 1579 Hv_44K_v2
CCCCACGTCCATGCGCACAGCCGCGACGGCGCTCACGAGAACGCGGCGCTGCTTTATTAC
GCATTTTTTACGGCCAAGTAGTATTTTATCGTCCATCTGTTCTTTCTTCTCGGAGAAAAA
GTAAGTAATCCTGTTATCTCCTCGCGTCGCTCTCGGCGCAATAATAAAAGCGCAACGGCA
CCCAGCGATCTAGGCCTCCTCCTCGCCCGCATCGCCTTCCCTCCGCTCGCGTCTGCTGCA
CTTCCTCTCCCAGCCCGGCTAGATCTCGCCGGAGGAGATGGCGGACGCGAAGCAGCAGCA
GGCCGCGGCGCCCACCGGCGTCTGGAAGACGATAAAGCCATTCGTCAATGGTGGCGCCTC
CGGGATGCTCGCCACCTGCGTCATCCAGCCCATCGACATGATCAAGGTGAAGATCCAGTT
GGGTGAGGGATCTGCAGCTCAGGTCGCAAAGACAATGTATGCTAATGAGGGCCTTGGTTC
CTTCTACAAGGGTTTGTCAGCAGGTTTACTAAGGCAAGCTACCTATACGACAGCTCGTCT
TGGATCCTTCAGGGTTTTGACAAACAAAGCAATTGAGGCAAATGATGGGAGGCCATTGCC
GCTTGTTCAGAAAGCTTTTATTGGTCTAACTGCTGGAGCGATTGGCGCATGTGTGGGCAG
TCCTGCTGATTTGGCACTCATTAGGATGCAAGCTGATTCGACCCTACCAGCAGCACAGCG
GCGTCACTACAAAAATGCATTCCACGCACTCTACCGTATCACAGCTGATGAAGGTGTCCT
TGCGCTTTGGAAGGGTGCAGGCCCAACTGTGGTGAGAGCCATGTCACTGAATATGGGCAT
GCTTGCGTCCTATGATCAAAGTGTTGAGCTGTTCAGAGACAAATTGGGTGCCGGAGAATA
TCAGACTGTTATTGGAGCCAGTGCAATTTCTGGATTCTGTGCGGCTGCCTGCAGTTTGCC
CTTTGATTATGTGAAAACACAAATTCAGAAGATGCAACCTGATGCCACTGGAAAGTACCC
ATACACTGGGTCTTTGGACTGTGCCATGCAAACCATGAAGACTGGTGGCCCATTTAAGTT
CTACTCCGGCTTTCCAGTATATTGTGTCAGGATCGCCCCGCATGTCATGATGACGTGGCT
CTTCTTGAATCAAATCCAGAAGTACCAGAAGAAGATCGGCATATAAGATCTCCAGTTGGA
GACAGTATCAATCCTTGCTCGACACATTTAATAACTTTTCAGCAGCTTTGCATCTCCCGT
GGTTGTTTTTGGTAGACAGAGTTTTAAGCAATTTTTACCGTAGCTTACATTTGCTGTGGT
ACTCTTGACGTTGTTACAATAATCACATAATCACATTATTTGTTGTAATTGGGGCAATTT
TTGGCGGCATACTTCTGTTGGCTGGGCACAGCCATGAGACACTACTACCTGCTTGGCTGC
TTGTGCCATCTGGTCTTGTATGGTGTACGCTCAATTTAATCCGTTGCTTATTTTTTTCTT
TTCTAAAAAAAAAAAAAAAAACTTGCACCATAGCCTAAAATAAATTGGAAATGTTGTACT
CCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15165 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g11780.1	307	0.0	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi2g32600.2	303	0.0
Arabidopsis v10	AT5G19760.1	298	4e-169	Mitochondrial substrate carrier family protein \| chr5:6679591-6681845 REVERSE LENGTH=298