barSeed - Barley Seed Development Database

Probe CUST_26215_PI390587928

Source Contig U35_15166

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26215_PI390587928	Hv_44K_v2	ATAAAGCAATTGAAGCAAACGAAGGAAAACCACTGCCCCTAGTCCAGAAGGCTGCTATTG	474	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.561	0.541	0.984	1.689	1.183	1.246
Raw	15.792	21.154	36.526	98.295	24.511	27.993

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11692.1	1912	2e-24	1159 - 1218	100	60 / 60	minus	ABC02784 ABC02785
JLOC1	JLOC1_7773.1	1816	8e-25	598 - 657	100	60 / 60	plus
Harvest21	ABC28019	600	3e-25	470 - 529	100	60 / 60	plus
Harvest21	ABC02784	1606	3e-25	475 - 534	100	60 / 60	plus	ABC02784
Harvest35	U35_50766	868	3e-25	632 - 691	100	60 / 60	minus
Harvest35	U35_15167	1602	3e-25	471 - 530	100	60 / 60	plus
Harvest35	U35_15166	624	3e-25	475 - 534	100	60 / 60	plus

Contig Sequence (624 bp)

>U35_15166 624 Hv_44K_v2
GAAAATTGCCCGTGGGCTCGTGGCTCACGCCGAGGTATCCAGCCACGACACCACACGTCC
CCGTCGCCTCCCACCACCTCTGCTTCCCACCACCTCTGCTTCTCCGGAAGCCCAGGCAGC
AGCGCGGGAGCTCCTCCTAGCTCGGGACCAGTGGGAGTTGATACGAGGAGGAGGAGATGG
CGGATGCGAAGCAGCAGCAGCCGCCGCAGACGGCGTTGGCGGCCAGCGGCGTCTGGAAGA
CCGTGAAGCCCTTCGTGAACGGCGGCGCCTCCGGCATGCTCGCCACCTGCGTCATCCAGC
CCATCGACATGGTCAAGGTGAAGATCCAGTTGGGCGAGGGCTCTGCAACTTCTGTCACCA
AGAAGATGCTTGCTAATGAGGGGATTGGTTCCTTTTACAAGGGATTATCTGCTGGTTTGC
TAAGGCAAGCGACATACACAACCGCTCGACTTGGTTCCTTCAGGGTTCTAACAAATAAAG
CAATTGAAGCAAACGAAGGAAAACCACTGCCCCTAGTCCAGAAGGCTGCTATTGGTCTCA
CTGCTGGAGCGATTGGAGCGTGTTTTGGTAGTCCTGCGGATTTGGCACTCATTAGGATGC
AGGCTGATTCAACCTTGCCAGCAG

Homology of Contig U35_15166 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g11780.1	307	7e-79	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi2g06520.1	305	4e-80
Arabidopsis v10	AT5G19760.1	298	4e-63	Mitochondrial substrate carrier family protein \| chr5:6679591-6681845 REVERSE LENGTH=298