barSeed - Barley Seed Development Database

Probe CUST_26214_PI390587928

Source Contig U35_15167

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26214_PI390587928	Hv_44K_v2	GATAAGTGGGTGTTTGTGCTAGCTGCTGATCATGCTAGGCATTGTAACATTGTAAGGCTT	1526	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11692.1	1912	2e-24	103 - 162	100	60 / 60	minus	ABC02784 ABC02785
JLOC1	JLOC1_7773.1	1816	8e-25	1654 - 1713	100	60 / 60	plus
Harvest21	ABC02784	1606	3e-25	1531 - 1590	100	60 / 60	plus	ABC02784
Harvest35	U35_15167	1602	3e-25	1527 - 1586	100	60 / 60	plus

Contig Sequence (1602 bp)

>U35_15167 1602 Hv_44K_v2
GGCGAGAGGAGGAAAATTGCCCGTGGGCTCGTGGCTCACGCCGAGGTATCCAGCCACGAC
ACCACACGTCCCCCTCTGCTTCCCACCACCTCTGCTTCTCCGGAAGCCCAGGCAGCAGCG
CGGGAGCTCCTCCTAGCTCGGGACCAGTGGGAGTTGATACGAGGAGGAGGAGATGGCGGA
TGCGAAGCAGCAGCAGCCGCCGCAGACGGCGTTGGCGGCCAGCGGCGTCTGGAAGACCGT
GAAGCCCTTCGTGAACGGCGGCGCCTCCGGCATGCTCGCCACCTGCGTCATCCAGCCCAT
CGACATGGTCAAGGTGAAGATCCAGTTGGGCGAGGGCTCTGCAACTTCTGTCACCAAGAA
GATGCTTGCTAATGAGGGGATTGGTTCCTTTTACAAGGGATTATCTGCTGGTTTGCTAAG
GCAAGCGACATACACAACCGCTCGACTTGGTTCCTTCAGGGTTCTAACAAATAAAGCAAT
TGAAGCAAACGAAGGAAAACCACTGCCCCTAGTCCAGAAGGCTGCTATTGGTCTCACTGC
TGGAGCGATTGGAGCGTGTTTTGGTAGTCCTGCGGATTTGGCACTCATTAGGATGCAGGC
TGATTCAACCTTGCCAGCAGCCCAGCGCCGCCACTATAAGAATGCTTTTCATGCACTTTA
CCGTATTATTGCTGATGAAGGTGTTCTGGCACTTTGGAAGGGAGCAGGTCCAACTGTAGC
GAGAGCGATGTCACTAAACATGGGCATGCTTGCCTCCTACGATCAGAGTGTTGAGTTTCT
TAGAGACAAACTTGGTGCTGGTGAACTTTCTACAATGCTTGGGGCCAGTGCTGTTTCAGG
ATTCTTTGCATCTGCTTGCAGTTTGCCTTTCGACTATGTTAAGACACAGGTTCAGAAGAT
GCAACCTGATGCTACTGGAAAGTATCCATACACTGGATCTCTTGACTGTGCAATGAAGAC
CTTGAAGAGTGGTGGTCCATTTAAGTTCTACACTGGCTTTCCGGTCTACTGTGTCAGGAT
TGCTCCACACGTCATGATGACCTGGATATTCTTGAATCAGATCCAGAAGGTCGAGAAGCG
TGTCGGCCTTTAAAGTGCCATGCTATGCTATCCTTGCCGACAAATTGTAATAGTGTAGCT
TCTTTGTACCTATATAAATCAGCAGTTGGTTCTGATAGACAAAATCTGTACTTATCTCAT
TGGCCTATATGCTACCCTTGTTCTTTGTGTCTTTCAGACCAAATAATCTTATAATTTCTG
GGTAACTTTTGGCTGAAAGTATAGTTGTTAGGAGCAGATACGCCACCACCGGAGTGAACC
CATCTCATCAATGGAGCCGGACATCAAACAACCCTTTTTCAGTATATATTTGTTTAGGCC
TTATGTTTATCAAGTGTCAAAATGCATTCTTTTGGCTGGGTAGCATGTGTAGTTAATTCT
CATTGTTGTTGTATTTTTCTTGGTATATCACGTACAAGCATTTTTGCTGGTTCTGTTGTG
TGCCACTACTGCATTCGCTGAGATGTGATAAGTGGGTGTTTGTGCTAGCTGCTGATCATG
CTAGGCATTGTAACATTGTAAGGCTTNCTGGTGTACTGCTGT

Homology of Contig U35_15167 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g11780.1	307	1e-177	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi2g06520.1	305	0.0
Arabidopsis v10	AT5G19760.1	298	2e-152	Mitochondrial substrate carrier family protein \| chr5:6679591-6681845 REVERSE LENGTH=298