barSeed - Barley Seed Development Database

Probe CUST_26210_PI390587928

Source Contig U35_15169

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26210_PI390587928	Hv_44K_v2	CGTGATTAAGTTTTCAGTGCTAAGCTCTCTCACAATTGTAATCAACTTCTACAATTGGAA	611	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37052.2	678	9e-22	621 - 678	98	57 / 58	plus	ABC00383 ABC00931 ABC00996 ABC52622
JLOC1	JLOC1_23941.2	1696	4e-23	708 - 767	98	59 / 60	plus
Harvest21	ABC00383	2260	6e-22	1367 - 1423	98	56 / 57	plus	ABC00383
Harvest35	U35_15169	745	3e-25	612 - 671	100	60 / 60	plus

Contig Sequence (745 bp)

>U35_15169 745 Hv_44K_v2
GCACGAGGAGCGAGTGAGCGAGTGTTGCACAAACAACATGTCTGCCTGTGTCATGGCATC
TTTGGCTCTGAAACCATCTTCCTCTCCTCTGTTACAACGATCCAAGCTTGGAGGCGTGCG
ACCATCGGCGAGGCCGTCGTTGGTCATAGTGGCCAAGAAGGCGAAGAAGGTCCAGACTGC
CCAACCCTACGGGCCTGGTGGTGGAGTGGCGTTCAAGGAAGGCGTCGATGCGTCTGGAAG
GGTAGCCAAGGGGAAGGGTGTTTACCAGTTTGCCGACAAGTATGGAGCAAATGTTGATGG
GTACAGCCCTATATACACACCAGAAGAGTGGTCTCCAAGTGGCGACGTTTATGTTGGAGG
AAAGACGGGGCTGTTTCTCTGGGCAGTGACTCTTGCTGGAATTCTGCTGGGCGGTGCTCT
TCTTGTCTACAGTACTAGCGCCTTGGCTTCCTGAAGCCTATGTGCAGCAAACCAAGCTAT
GCACCAAACGATGTGTATAATAGTGCGGATTATAACCGTCAGGACATATGTAATGGATAC
AAATATCACTACCCGCAAATCAGTAAATATCCTTAATTAATTAATAAAAAAAAAAAAAAA
AATGCTGCAAGCGTGATTAAGTTTTCAGTGCTAAGCTCTCTCACAATTGTAATCAACTTC
TACAATTGGAATTCTTTTTTAAAAAAAAAAAANNNNNAAAAAANNNAAAAAAAAAAAANN
NAAAANNNAAAAAAAAAAAAAAAAA

Homology of Contig U35_15169 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None