barSeed - Barley Seed Development Database

Probe CUST_261_PI390587928

Source Contig U35_32046

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_261_PI390587928	Hv_44K_v2	AATGCGCTGTTTCTCCATTGTCACTGCAAGGAATCAAAGATGCTGGGTATGAAAGGCTGA	329	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.581	1.195	1.184	0.742	0.467	0.463
Raw	99.934	104.385	103.858	97.265	22.562	24.447

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56149.2	1610	2e-24	373 - 432	100	60 / 60	plus	None
MLOC	MLOC_56149.3	1536	2e-24	373 - 432	100	60 / 60	plus	None
MLOC	MLOC_56149.1	2140	2e-24	379 - 438	100	60 / 60	plus	None
JLOC1	JLOC1_36293.1	2344	8e-25	508 - 567	100	60 / 60	plus
Harvest35	U35_32046	443	3e-25	330 - 389	100	60 / 60	plus

Contig Sequence (443 bp)

>U35_32046 443 Hv_44K_v2
TGCGACCTCCCTCCCACGTTGTCGCCCGCTCGTCGCCGCCGCCGCCGCCGCCGCCGCTAA
TATCGACATCGCCGGCGTTCCCAGCGGTATCATGTCAGGCAATCGAGGGTACGCGGCAGC
CCCGAAGCGGCAGCGGAGGCGGCGCCCGAGGGACGCGGAGGACGGCTCCGCGTTCCCCAG
GGCTGTCGCGAGCCGGCCAAGAGGTGCCGACCAGGTCCGCGAGGTTGCCGTAGTGCCAGC
GGAGGCCATGGATATCGATGCGGGGACAAGTACCAATGCTGCCACAGGAGGCGTGGATGG
ATCGTACCTCAGCGACACACGGTTTGATCAATGCGCTGTTTCTCCATTGTCACTGCAAGG
AATCAAAGATGCTGGGTATGAAAGGCTGACCCGCGTCCAGGAGGCTACTCTGCCGGTAAT
TCTTCAAGGCAAGATGTTCTTGC

Homology of Contig U35_32046 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None