barSeed - Barley Seed Development Database

Probe CUST_26198_PI390587928

Source Contig U35_27149

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26198_PI390587928	Hv_44K_v2	GTACCTGCCAGGGTGTGCATTCGGTTTACTCAGTAAGGGCATTTCTAACACATCAAAAAA	384	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.639	3.467	3.763	1.279	0.341	0.211
Raw	240.655	2022.863	1860.800	971.305	93.504	63.299

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64981.2	1677	3e-21	1581 - 1634	100	54 / 54	plus	ABC43163
MLOC	MLOC_64981.4	1918	3e-21	33 - 86	100	54 / 54	minus	ABC43163
MLOC	MLOC_64981.3	1518	3e-21	33 - 86	100	54 / 54	minus	ABC43163
MLOC	MLOC_64981.1	1942	3e-21	376 - 429	100	54 / 54	minus	ABC43163
JLOC1	JLOC1_42716.2	1675	2e-21	1530 - 1583	100	54 / 54	plus
JLOC1	JLOC1_42716.1	1780	2e-21	1635 - 1688	100	54 / 54	plus
Harvest35	U35_27149	455	3e-25	385 - 444	100	60 / 60	plus

Contig Sequence (455 bp)

>U35_27149 455 Hv_44K_v2
CGCGCCGCATACTTCCGGAACCTGCAGGTGGTGGACTGGGACAACAGCATCATCCGGGCG
TCCGGCCTCAAGCTCCTCGCCGACCACCCCGGCTGCTACGACATCCAGGGTGGGTTCAGC
GGACACTGGGGGACATACTTCTACTACGGAGGGCCAGGGAGGAACGTGAAATGCCCCTGA
GTCTCAGGTTTTTTTGTTTGTTTGGGCTCTCTTGCTGTTTGTTTCTTGGCTTTGTTTGTC
TGTTTTTTTGTTCGGTACCAAATCTTTTGCGACAGTAACCCCATTATTTCTAGTAGGGAT
ATCATTGTTAGGGTTAGGTCTTTAGCTCCTGGATGCATATGGACACTCGAGGGTTGAGAG
GAATCTGTAAATTTTGAGAGAAGTGTACCTGCCAGGGTGTGCATTCGGTTTACTCAGTAA
GGGCATTTCTAACACATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_27149 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None