barSeed - Barley Seed Development Database

Probe CUST_26191_PI390587928

Source Contig U35_39128

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26191_PI390587928	Hv_44K_v2	TGGTGTCTACTACGACCGCCTCGACGTCTACGCCTCCTACAAATACCAACAGATCACTGT	280	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.741	2.901	1.251	0.788	0.628	0.559
Raw	29.887	48.865	18.903	18.372	2.947	2.807

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6791.1	2287	2e-24	1664 - 1723	100	60 / 60	minus	ABC06587 ABC21692
MLOC	MLOC_6791.2	1366	2e-24	743 - 802	100	60 / 60	minus	ABC06587 ABC21692
MLOC	MLOC_6791.3	1027	2e-24	536 - 595	100	60 / 60	minus	ABC06587 ABC21692
MLOC	MLOC_6791.4	860	2e-24	480 - 539	100	60 / 60	minus	ABC06587 ABC21692
MLOC	MLOC_6791.5	854	2e-24	480 - 539	100	60 / 60	minus	ABC06587 ABC21692
JLOC1	JLOC1_4443.1	1611	8e-25	1090 - 1149	100	60 / 60	minus
Harvest21	ABC35122	485	3e-25	281 - 340	100	60 / 60	plus
Harvest35	U35_39128	485	3e-25	281 - 340	100	60 / 60	plus

Contig Sequence (485 bp)

>U35_39128 485 Hv_44K_v2
GAACTGATCAAAGCAGCCAGCTAGCCATGGGCAAGGACTGCGGCAACCACGGCGACGACC
ACCTCCGGAACGGCTGCCGGCGCCTCCTGGCCGTGCTCCTGGGCCTGGCGTTCATCGTCG
CCATCATCGCCCTCATCGTCTACCTGGTGCTCCGCCCCACCCACCCGCGCTTTTTCCTCC
AGGACGCCTCCCTCCGGCAGCTCGACCTCTCCAACTCCTCGGGCCTCCTCTCCACCTCCC
TCCAGGTCACCGTTGCCTCCCGCAACCCCAACGACCGGGTTGGTGTCTACTACGACCGCC
TCGACGTCTACGCCTCCTACAAATACCAACAGATCACTGTCGCCGCCTCGCTCCCGTCGG
TCTACCAGGGCCACGGCGACGTCGACGTATGGTCGCCGGTGCTCGACGGGCCCAACGTGC
CCTTCGCACCCTACCTAGCCAGCGCCATCTCCCAGGACTGCCAGGCGGGCTACCTCATCC
TCCAG

Homology of Contig U35_39128 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g06260.1	213	1e-66	protein\|harpin-induced protein 1 domain containing protein, expressed
Brachypodium v1_2	Bradi4g41990.1	216	2e-68
Arabidopsis v10	None