barSeed - Barley Seed Development Database

Probe CUST_26189_PI390587928

Source Contig U35_15170

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26189_PI390587928	Hv_44K_v2	ATATTCAGAGTTGAGAACCACCTTCACATGAATTTTTGTGTGTGTGAGCGCCAACTTGTA	205	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37052.3	839	2e-24	232 - 291	100	60 / 60	plus	ABC00383 ABC00931 ABC00996 ABC52622
Harvest21	ABC00931	693	3e-25	206 - 265	100	60 / 60	plus	ABC00931
Harvest35	U35_15170	693	3e-25	206 - 265	100	60 / 60	plus

Contig Sequence (693 bp)

>U35_15170 693 Hv_44K_v2
GGCGAGTGTTGCACAAACAACATGTCTGCCTGTGTCATGGCATCTTTGGCTCTGAAACCA
TCTTCCTCTCCTCTGTTACAACGATCCAAGCTTGGAGGCGTGCGACCATCGGCGAGGCCG
TCGTTGGTCATAGTGGCCAAGAAGGCGAAGAAGGTCCAGACTGCCCAACCCTACGGTGGG
TATACATATACATGTATATGGCGTAATATTCAGAGTTGAGAACCACCTTCACATGAATTT
TTGTGTGTGTGAGCGCCAACTTGTAGGGCCTGGTGGTGGAGTGGCGTTCAAGGAAGGCGT
CGATGCGTCTGGAAGGGTAGCCAAGGGGAAGGGTGTTTACCAGTTTGCCGACAAGTATGG
AGCAAATGTTGATGGGTACAGCCCTATATACACACCAGAAGAGTGGTCTCCAAGTGGCGA
CGTTTATGTTGGAGGAAAGACGGGGCTGTTTCTCTGGGCAGTGACTCTTGCTGGAATTCT
GCTGGGCGGTGCTCTTCTTGTCTACAGTACTAGCGCCTTGGCTTCCTGAAGCCTATGTGC
AGCAAACCAAGCTATGCACCAAACGATGTGTATAATAGTGCGGATTATAACCGTCAGGAC
ATATGTAATGGATACAAATATCACTACCCGCAAATCAGTAAATATCCTTAATTAATTACT
AATGTTCTAAGCAACATGCAAAAAAAAAAATTA

Homology of Contig U35_15170 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None